Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-04-14 |  |
Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats] | Tun W, Poologasundarampillai G, Bischof H, Nye G, King ONF, Basham M, Tokudome M, Lewis RM, Johnstone ED, Brownbill P, Darrow M, Chernyavsky IL | 75.3 GB | — |
| 2021-04-14 |  |
Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats] | Tun WM, Poologasundarampillai G, Bischof H, Nye G, King ONF, Basham M, Tokudome Y, Lewis RM, Johnstone ED, Brownbill P, Darrow M, Chernyavsky IL | 50.5 GB | — |
| 2021-04-14 |  |
Human NLRP1-DPP9 complex [multiple data sets in TIFF format] | Hollingsworth LR, Sharif H, Wu H [Pubmed: 33731932] [DOI: 10.1038/s41586-021-03350-4] |
2.3 TB | 3.6 Å |
| 2021-04-14 |  |
Human NLRP1-DPP9-VbP complex [multiple data sets in TIFF format] | Hollingsworth LR, Sharif H, Wu H [Pubmed: 33731932] [DOI: 10.1038/s41586-021-03350-4] |
1.2 TB | 2.9 Å |
| 2021-04-14 |  |
DNA origami signposts for identifying proteins on cell membranes by electron cryotomography [2 tilt series in MRC format] | Silvester E, Vollmer B, Pražák V, Vasishtan D, Machala EA, Whittle C, Black S, Bath J, Turberfield AJ, Grünewald K, Baker LA [Pubmed: 33606980] [DOI: 10.1016/j.cell.2021.01.033] |
38.8 MB | 36.44 Å |
| 2021-04-14 |  |
Nucleus as Fiducials for SXT and SIM Correlation [1 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 2.5 GB | — |
| 2021-04-14 |  |
Cryo-electron tomography of the metazoan membrane-assembled retromer:SNX3 coat containing Wls cargo motif [multiple data sets in TIFF and MRC formats] | Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ [Pubmed: 33762348] [DOI: 10.1126/sciadv.abf8598] |
764.9 GB | 8.9 - 9.5 Å |
| 2021-04-14 |  |
Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses [multiple data sets in MRC format] | Flatt JW, Domanska A, Seppälä AL, Butcher SJ [Pubmed: 33637854] [DOI: 10.1038/s42003-021-01779-x] |
3.5 TB | 2.7 - 3.4 Å |
| 2021-04-14 |  |
SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs [3576 multi-frame micrographs composed of 50 frames each in TIFF format] | Kern DM, Gerber EE, Brohawn SG [Pubmed: 35145074] [DOI: 10.1038/s41467-022-28435-0] |
2.7 TB | 3.65 Å |
| 2021-04-14 |  |
Cytoklepty in the plankton: a host strategy to optimize the bioenergetic machinery of endosymbiotic algae [500 multi-frame micrographs composed of 1 frames each in TIFF format] | Uwizeye C, Mars Brisbin M, Gallet B, LeKieffre C, Schieber NL, Wangpraseurt D, Decelle J [Pubmed: bioRxiv] [DOI: 10.1101/2020.12.08.416644] |
2.9 GB | — |
| 2021-04-14 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x4 [2484 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R, Yanagisawa H, Kikkawa M [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
688.8 GB | 1.35 Å |
| 2021-04-14 |  |
Cryo electron tomography of the reconstituted TRIM72-proteoliposomes on both positive and negative curvatures. [multiple data sets in MRC format] | Park SH, Song HK | 6.2 GB | — |
| 2021-04-14 |  |
In situ cryo-electron tomogram of a pyrenoid inside a Chlamydomonas reinhardtii cell (tilt series) [1 tilt series in MRC format] | Cuellar LK, Schaffer M, Martinez-Sanchez A, Plitzko JM, Foerster F, Engel BD [Pubmed: 28938114] [DOI: 10.1016/j.cell.2017.08.008] |
5.8 GB | — |
| 2021-04-14 |  |
mouse MDA5-dsRNA filamemts in complex of 2mM ADP-AlF4 [multiple data sets in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
195.3 GB | 4.06 Å |
| 2021-04-06 |  |
Cryo-EM structure of the ternary Netrin 1-Neogenin 1-Repulsive Guidance Molecule B complex [1635 multi-frame micrographs composed of 40 frames each in TIFF format] | Robinson RA, Griffiths SC, van de Haar LL, Malinauskas T, van Battum EY, Zelina P, Schwab RA, Karia D, Malinauskaite L, Brignani S, van den Munkhof M, Dudukcu O, De Ruiter AA, Van den Heuvel DMA, Bishop B, Elegheert J, Aricescu AR, Pasterkamp RJ, Siebold C [Pubmed: 33740419] [DOI: 10.1016/j.cell.2021.02.045] |
1.2 TB | 5.98 Å |
| 2021-04-06 |  |
CryoET dataset of T20S proteasome for testing motion-aware tilt-series alignment and 3D reconstruction [3 tilt series in MRC format] | Fernandez JJ [Pubmed: 29410148] [DOI: 10.1016/j.jsb.2018.02.001] |
5.1 GB | 9.0 Å |
| 2021-04-06 |  |
Metavinculin ABD-F-actin complex [1818 multi-frame micrographs composed of 40 frames each in TIFF format] | Mei L, Alushin GM [Pubmed: 32969337] [DOI: 10.7554/eLife.62514] |
593.0 GB | 2.9 Å |
| 2021-04-06 |  |
Human 46QHuntingtin-HAP40 complex structure [1115 micrographs in MRC format] | GUO Q [Pubmed: 33909994] [DOI: 10.1016/j.str.2021.04.003] |
59.2 GB | 3.6 Å |
| 2021-03-29 |  |
Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E [multiple data sets in MRC and MRCS formats] | Chandler-Bostock R, Mata CP, Bingham RJ, Dykeman EC, Meng B, Tuthill TJ, Rowlands DJ, Ranson NA, Twarock R, Stockley PG [Pubmed: 33370422] [DOI: 10.1371/journal.ppat.1009146] |
635.4 GB | 2.23 Å |
| 2021-03-26 |  |
GluK2/K5 with 6-Cyano-7-nitroquinoxaline-2,3-dione (CNQX) [multiple data sets in TIFF and MRCS formats] | Khanra NK, Meyerson JRM [Pubmed: 33724189] [DOI: 10.7554/eLife.66097] |
5.9 TB | 5.3 Å |
| 2021-03-26 |  |
GluK2/K5 with L-Glu [multiple data sets in TIFF and MRCS formats] | Khanra NK, Meyerson JRM [Pubmed: 33724189] [DOI: 10.7554/eLife.66097] |
3.4 TB | 5.8 Å |
| 2021-03-24 |  |
CryoEM SPA of Apo-SrpI Encapsulin Complex (Raw Frames) [2967 multi-frame micrographs composed of 39 frames each in TIFF format] | Nichols RJ, LaFrance BJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Nogales E, Savage DF [Pubmed: 33821786] [DOI: 10.7554/eLife.59288] |
1.6 TB | 2.9 Å |
| 2021-03-24 |  |
Jack bean urease imaged at 49kX nominal magnification [239 multi-frame micrographs composed of 30 frames each in TIFF format] | Feathers JR, Spoth KA, Fromme JC [Pubmed: 33817625] [DOI: 10.1016/j.yjsbx.2021.100047] |
169.3 GB | 2.77 Å |
| 2021-03-24 |  |
Jack bean urease imaged at 39kX nominal magnification [286 multi-frame micrographs composed of 50 frames each in TIFF format] | Feathers JR, Spoth KA, Fromme JC [Pubmed: 33817625] [DOI: 10.1016/j.yjsbx.2021.100047] |
457.0 GB | 3.06 Å |
| 2021-03-24 |  |
Alpha-E-catenin ABD-F-actin complex [7317 multi-frame micrographs composed of 40 frames each in TIFF format] | Mei L, Alushin GM [Pubmed: 32969337] [DOI: 10.7554/eLife.62514] |
2.4 TB | 3.2 Å |
