Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
We have seen a large number of SARS-CoV-2 structures being determined rapidly and deposited into the PDB and EMDB, which provides a starting point for structure-guided drug discovery. In order to validate and reanalyze the data by the cryo-EM community, we would like to make the following urgent appeal. a) If you have deposited any cryo-EM structures related to SARS-CoV-2 to the EMDB (and possibly the PDB), please deposit the raw data to EMPIAR. b) If you have collected cryo-EM data related to SARS-CoV-2 but have not yet deposited a structure, please consider depositing the raw data to EMPIAR, so that the cryo-EM community could contribute to processing and model-building.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-09-26 |  |
Single particle cryo-EM dataset of human nucleolar and nuclear pre-60S assembly intermediates [multiple data sets in TIFF and MRCS formats] | Vanden Broeck A, Klinge S [Pubmed: 37410842] [DOI: 10.1126/science.adh3892] EMD-29104,EMD-29252,EMD-29105,EMD-29253,EMD-29106,EMD-29254,EMD-29107,EMD-29255,EMD-29108,EMD-29256,EMD-29109,EMD-29257,EMD-29110,EMD-29258,EMD-29111,EMD-29259,EMD-29112,EMD-29260,EMD-29113,EMD-29261,EMD-29114,EMD-29262,EMD-29115,EMD-29263,EMD-29130,EMD-29131,EMD-29132,EMD-29133,EMD-29134,EMD-29135,EMD-29136,EMD-29137,EMD-29138,EMD-29139,EMD-29140,EMD-29141,EMD-29142,EMD-29128,EMD-29129,EMD-29143,EMD-29144,EMD-29145,EMD-29146,EMD-29147,EMD-29148,EMD-29149,EMD-29150,EMD-29151,EMD-29152,EMD-29153,EMD-29154,EMD-29155,EMD-29156,EMD-29157,EMD-29158,EMD-29159,EMD-29160,EMD-29161,EMD-29162,EMD-29163,EMD-29164,EMD-29165,EMD-29166,EMD-29167,EMD-29168,EMD-29169,EMD-29170,EMD-29171,EMD-29173,EMD-29174,EMD-29175,EMD-29176,EMD-29177,EMD-29178,EMD-29179,EMD-29180,EMD-29181,EMD-29182,EMD-29183,EMD-29184,EMD-29185,EMD-29186,EMD-29187,EMD-29188,EMD-29189,EMD-29192,EMD-29194,EMD-29193,EMD-29116,EMD-29265,EMD-29117,EMD-29266,EMD-29118,EMD-29267,EMD-29119,EMD-29268,EMD-29120,EMD-29269,EMD-29121,EMD-29271,EMD-29122,EMD-29272,EMD-29123,EMD-29273,EMD-29124,EMD-29274,EMD-29125,EMD-29275,EMD-29126,EMD-29276,EMD-29127,EMD-29277,EMD-29195,EMD-29196,EMD-29197,EMD-29198,EMD-29199,EMD-29200,EMD-29201,EMD-29202,EMD-29204,EMD-29205,EMD-29206,8fkp,8fkq,8fkr,8fks,8fkt,8fku,8fkv,8fkw,8fkx,8fky,8fkz,8fl0,8fl2,8fl3,8fl4,8fl6,8fl7,8fl9,8fla,8flb,8flc,8fld,8fle,8flf |
140.5 TB | 2.33 - 3.75 Å |
| 2023-09-25 |  |
The potassium-selective channelrhodopsin HcKCR1 and HcKCR2 in lipid nanodisc [multiple data sets in TIFF format] | Tajima S, Kim YS, Fukuda M, Nakamura S, Yamashita K, Deisseroth K [Pubmed: 37652010] [DOI: 10.1016/j.cell.2023.08.009] EMD-34530,EMD-34531,EMD-35713,8h86,8h87,8iu0 |
4.1 TB | 2.53 - 2.66 Å |
| 2023-09-25 |  |
Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex [11120 multi-frame micrographs composed of 50 frames each in TIFF format] | Nygaard R, Graham CLB, Belcher Dufrisne M, Colburn JD, Pepe J, Hydorn MA, Corradi S, Brown CM, Ashraf KU, Vickery ON, Briggs NS, Deering JJ, Kloss B, Botta B, Clarke OB, Columbus L, Dworkin J, Stansfeld PJ, Roper DI, Mancia F [Pubmed: 37620344] [DOI: 10.1038/s41467-023-40483-8] EMD-41299,EMD-41303,EMD-41304,8tj3 |
2.8 TB | 2.95 - 3.2 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the small dataset of ∆KsgA 30S plus KsgA sample [stack of 588015 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] EMD-28720,8eyt |
320.1 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the large dataset of ∆KsgA 30S plus KsgA sample [stack of 1821263 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] EMD-28720,8eyt |
991.2 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the ∆KsgA immature 30S sample [stack of 775859 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] EMD-28692,8eyq |
422.2 GB | 3.3 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and CsoS2 [20277 multi-frame micrographs composed of 50 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] EMD-15801,EMD-15799,8b12,8b11 |
6.9 TB | 1.86 - 2.52 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and truncated CsoS2 [13151 multi-frame micrographs composed of 40 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] EMD-15722,EMD-15720,EMD-15595,EMD-15723,EMD-15724,EMD-15719 |
2.2 TB | 2.02 - 3.29 Å |
| 2023-09-22 |  |
Cryo-EM micrographs of RESC1-RESC2 complex bound to gRNA [4420 multi-frame micrographs composed of 60 frames each in TIFF format] | Dolce LG, Nesterenko Y, Walther L, Weis F, Kowalinski E [Pubmed: 36999600] [DOI: 10.1093/nar/gkad217] EMD-16593 |
2.5 TB | 4.7 Å |
| 2023-09-22 |  |
Sheared F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] EMD-28934,8f8r |
7.3 TB | 3.3 Å |
| 2023-09-22 |  |
Short and capped F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] EMD-28932,EMD-28933,EMD-28935,EMD-28936,8f8p,8f8q,8f8s,8f8t |
7.4 TB | 2.26 - 3.26 Å |
| 2023-09-22 |  |
Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 1) [91457 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] EMD-16628,8cg3 |
14.5 TB | 2.39 Å |
| 2023-09-22 |  |
In-tissue cryo electron tomography of App^NL-G-F amyloid plaques [23 tilt series in MRC format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1002/pro.3943] EMD-16018,EMD-18301,8bfa |
38.0 GB | 3.0 Å |
| 2023-09-21 |  |
Single-particle cryo-EM dataset of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome [multiple data sets in TIFF and MRCS formats] | Bacic L, Gaullier G, Deindl S EMD-15777,8b0a |
8.3 TB | 3.0 Å |
| 2023-09-19 |  |
Spraguea lophii 100S ribosome [multiple data sets in TIFF format] | McLaren MJ, Gil Diez P, Isupov M, Conners R, Gambelli L, Gold V, Connell S, Walter A, Williams B, Daum B [Pubmed: 37709902] [DOI: 10.1038/s41564-023-01469-w] EMD-13892,7qca |
9.8 TB | 2.79 Å |
| 2023-09-14 |  |
Porcine uroplakin complex [multiple data sets in TIFF format] | Oda T, Yanagisawa H, Kikkawa M EMD-36340,8jj5 |
1.4 TB | 3.5 Å |
| 2023-09-14 |  |
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans (ALDH) [13797 multi-frame micrographs composed of 40 frames each in TIFF format] | Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O EMD-34368,8gy2 |
3.0 TB | 2.5 Å |
| 2023-09-12 |  |
CryoEM structure determination of actin decorated with smooth muscle heavy meromyosin [1507 multi-frame micrographs composed of 23 frames each in MRC format] | Hojjatian AH, Liu JL, Taylor DWT, Daneshparvar ND, Winkler HW, Ye FY, Fagnant PMF, Trybus KMT, Taylor KAT [Pubmed: 37414375] [DOI: 10.1016/j.jsb.2023.107995] EMD-29646,8g06 |
4.2 TB | 19.0 Å |
| 2023-09-12 |  |
Single Particle cryoEM dataset of Type I-F CRISPR integration complex from Pseudomonas aeruginosa [9875 multi-frame micrographs composed of 50 frames each in TIFF format] | Santiago-Frangos A, Henriques WS, Wiegand T, Gauvin CC, Buyukyoruk M, Graham AB, Wilkinson RA, Triem L, Neselu K, Eng ET, Lander GC, Wiedenheft B EMD-29280,8flj |
5.7 TB | 3.48 Å |
| 2023-09-11 |  |
Cryo-EM micrographs of RESC1-RESC2 complex [6816 multi-frame micrographs composed of 100 frames each in TIFF format] | Dolce LG, Nesterenko Y, Walther L, Weis F, Kowalinski E [Pubmed: 36999600] [DOI: 10.1093/nar/gkad217] EMD-16592,8cdp |
1.9 TB | 3.4 Å |
| 2023-09-11 |  |
Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 [12546 multi-frame micrographs composed of 2130 frames each in TIFF format] | Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS [Pubmed: 37640699] [DOI: 10.1038/s41467-023-40955-x] EMD-29490 |
11.9 TB | 5.14 Å |
| 2023-09-08 |  |
Single particle cryo-EM of rabbit ribosomes bound to human CCR4-NOT [multiple data sets in TIFF format] | Absmeier E, Chandrasekaran V, Passmore LA EMD-16052,8bhf |
6.6 TB | 3.1 Å |
| 2023-09-08 |  |
Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5 [14766 multi-frame micrographs composed of 49 frames each in TIFF format] | Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS [Pubmed: 37640699] [DOI: 10.1038/s41467-023-40955-x] EMD-29488,EMD-29489,8fvi,8fvj |
2.2 TB | 3.24 - 3.54 Å |
| 2023-09-06 |  |
Cryo-EM structure of the mutant solitary ECF module 2EQ in MSP2N2 lipid nanodiscs in the ATPase closed and ATP-bound conformation (300 kV) [multiple data sets in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] EMD-16124,8bms |
4.4 TB | 2.6 Å |
| 2023-09-05 |  |
Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells [multiple data sets in TIFF and MRC formats] | Fung HKH, Hayashi Y, Salo VT, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Müller CW, Cuylen-Haering S, Mahamid J EMD-16303,EMD-18194 |
174.2 GB | 13.7 - 31.3 Å |
