Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-12-12 |  |
2.3 A structure of the SiO2-sealed and revitrified (150 us) E.coli 50S ribosomal subunit [11896 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
4.7 TB | 2.3 Å |
| 2025-12-12 |  |
Cryo electron tomography of HIV-1 cores isolated by sedimentation through sucrose gradient [14 tilt series in TIFF format] | Nans A, Chenavier F, Hope J, Zhang P, Cherepanov P | 11.0 GB | 12.56 Å |
| 2025-12-10 |  |
2.7 A structure of the SiO2-sealed and revitrified (300 us) E.coli 50S ribosomal subunit [13133 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.8 TB | 2.7 Å |
| 2025-12-10 |  |
2.4 A structure of the SiO2-sealed and revitrified (30 us) E.coli 50S ribosomal subunit [10535 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.7 TB | 2.4 Å |
| 2025-12-08 |  |
RNAP-TopoI complex on duplex scaffold [multiple data sets in TIFF and MRC formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 10.2 TB | 2.6 - 3.8 Å |
| 2025-12-08 |  |
Complex between human carboxyhemoglobin and Staphylococcus aureus hemophore IsdH [1 micrographs - focal pairs - unprocessed in TIFF format] | Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S [DOI: 10.1016/j.yjsbx.2025.100138] |
1.5 TB | 3.1 - 4.5 Å |
| 2025-12-08 |  |
.zarr file of a tomographic scan of a mouse skull [1024 reconstructed volumes in BIG DATA VIEWER HDF5 format] | Haberthür D | 2.6 GB | — |
| 2025-12-08 |  |
Motion-corrected micrographs for herpesvirus helicase-primase complex bound to forked DNA [12555 micrographs in MRC format] | Baranovskiy AG, He Q, Suwa Y, Morstadt LM, Babayeva ND, Lim CJ, Tahirov TH [Pubmed: 41202142] [DOI: 10.1126/sciadv.adz1989] |
2.2 TB | 3.16 - 3.43 Å |
| 2025-12-08 |  |
Motion-corrected micrographs for herpesvirus helicase-primase complex bound to forked DNA with inhibitor Amenamevir [12660 micrographs in MRC format] | Baranovskiy AG, He Q, Suwa Y, Morstadt LM, Babayeva ND, Lim CJ, Tahirov TH [Pubmed: 41202142] [DOI: 10.1126/sciadv.adz1989] |
1.1 TB | 2.86 - 3.1 Å |
| 2025-12-07 |  |
Proton-powered peptide transporter SbmA in lipid nanodisc complexed with Fab S11-1 at pH 5.5 [6069 multi-frame micrographs composed of 40 frames each in TIFF format] | Ettema T.W., Thangaratnarajah C., Inaba-Inoue S., Stepien P., Heddle J.G.H., Stockner T., Pliotas C., Slotboom D.J., Beis K. | 2.4 TB | 3.44 - 3.58 Å |
| 2025-12-07 |  |
Cryo-electron tomography of Caulobacter crescentus expressing mcherry-tagged WT-PopZ [18 tilt series in MRC format] | Lasker K, Park D, Deniz A | 55.3 GB | — |
| 2025-12-07 |  |
Cryo-electron tomography of condensates formed by purified Caulobacter crescentus PopZ constructs [35 tilt series in MRC format] | Lasker K, Park D, Deniz A | 322.6 GB | — |
| 2025-12-07 |  |
Cryo electron micrographs of Arabidopsis thaliana H2A-H3.3-nucleosome with Arabidopsis native 147bp DNA 15.2.2 [multiple data sets in TIFF and MRCS formats] | Wang Y, Dong A | 2.8 TB | 3.22 - 3.47 Å |
| 2025-12-07 |  |
Cryo electron micrographs of Arabidopsis thaliana H2A.Z-H3.3-nucleosome with Arabidopsis native 147bp DNA 15.2.2 [multiple data sets in TIFF, MRC and MRCS formats] | Wang Y, Dong A | 2.0 TB | 2.71 - 2.9 Å |
| 2025-12-07 |  |
Cryo electron micrographs of Arabidopsis thaliana H2A.W-H3.3-nucleosome with Arabidopsis native 147bp DNA 15.2.2 [multiple data sets in TIFF and MRCS formats] | Wang Y, Dong A | 1.5 TB | 2.85 - 2.97 Å |
| 2025-12-07 |  |
Cryo-EM structures of SbmA in inward-facing conformations bound to sybodies in detergent micelles (200 kV) [1585 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Ettema TW, Slotboom DJ | 305.4 GB | 3.14 - 3.96 Å |
| 2025-12-07 |  |
Cryo-EM structure of SbmA in the inward-facing-wide conformation in detergent micelles (200 kV) [847 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Ettema TW, Slotboom DJ | 163.0 GB | 3.36 Å |
| 2025-12-07 |  |
Cryo-EM structure of SbmA in the inward-facing-occluded conformation in lipid nanodiscs (200 kV) [1295 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Ettema TW, Slotboom DJ | 252.3 GB | 3.07 Å |
| 2025-12-07 |  |
Raw tilt series of HERV-K Gag immature lattice [163 tilt series in MRC format] | Shen JS, Krebs A.S.K., Liu H.F.L., Howe A.H., Zhou Y.Z., Rey J.S.R., Levintov L.L., Perilla J.R.P., Zhang P.Z., Bartesaghi A.B. [Pubmed: 37333227] [DOI: 10.1101/2023.06.07.544027] |
1.4 TB | 3.2 Å |
| 2025-12-07 |  |
Cryogenic electron tomography reveals helical organization of lipoprotein lipase in storage vesicles [19 stitched maps in MRC format] | Gunn KH, Wheless A, Neher SB [Pubmed: 40768583] [DOI: 10.1126/sciadv.adx8711] |
10.8 GB | 32.0 Å |
| 2025-12-07 |  |
Motion corrected .mrc images of Panx1 containing c-terminal activating domain stack 2 [3318 micrographs in MRC format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
1.1 TB | 3.0 Å |
| 2025-12-07 |  |
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL and ATP [4266 multi-frame micrographs composed of 40 frames each in TIFF format] | Lee J, Manon V, Chen J | 3.3 TB | 3.6 Å |
| 2025-12-07 |  |
Transporter associated with antigen processing (TAP) bound to the viral protein BNLF2a from Epstein-Barr virus [8676 multi-frame micrographs composed of 40 frames each in TIFF format] | Lee J, Manon V, Chen J | 6.5 TB | 3.8 Å |
| 2025-12-07 |  |
Transporter associated with antigen processing (TAP) bound to ATP, ADP, and the viral protein rhUS6 from rhesus cytomegalovirus [18184 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Manon V, Chen J | 6.7 TB | 3.3 Å |
| 2025-12-07 |  |
PSI-LHCI of Euglena gracilis strain Z [7575 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Nakajima Y, Shen JR, Nagao R [Pubmed: 41171917] [DOI: 10.1126/sciadv.aea6241] |
1.4 TB | 2.83 Å |
