Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-06-13 |  |
Single-particle cryo-EM dataset of the glycosyltransferase ArnC from Salmonella enterica in the apo state from Talos Arctica microscope [multiple data sets in TIFF and MRC formats] | Ashraf KU, Punetha A, Kaelber JT, Petrou VI [Pubmed: 39974898] [DOI: 10.1101/2025.01.29.634835] |
1.3 TB | 2.79 Å |
| 2025-06-13 |  |
PSI-LHCI of the red alga Galdieria sulphuraria NIES-3638 [8800 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Nakajima Y, Shen JR, Nagao R [Pubmed: 40378202] [DOI: 10.1126/sciadv.adv7488] |
1.7 TB | 2.19 Å |
| 2025-06-13 |  |
Cryo electron tomography on xenon plasma FIB lamellae of high-pressure frozen E. coli [286 multi-frame micrographs composed of 10 frames each in EER format] | Berger C., Watson H., Naismith J. H., Dumoux M., Grange M. [Pubmed: 40055361] [DOI: 10.1038/s41467-025-57493-3] EMD-50675 EMD-50699 EMD-50700 EMD-50701 EMD-50702 EMD-50703 EMD-50676 EMD-50678 EMD-50679 EMD-50680 EMD-50681 EMD-50682 EMD-50683 EMD-50684 EMD-50685 EMD-50686 EMD-50687 EMD-50688 EMD-50689 EMD-50690 EMD-50691 EMD-50692 EMD-50693 EMD-50694 EMD-50695 EMD-50696 EMD-50697 EMD-50698 EMD-50704 EMD-50705 EMD-50706 |
2.2 TB | 4.0 - 15.8 Å |
| 2025-06-13 |  |
Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes [8323 multi-frame micrographs composed of 30 frames each in MRC format] | Mishra RK, Sharma P, Khaja FT, Uday AB, Hussain T [Pubmed: 38458197] [DOI: 10.1016/j.str.2024.02.006] |
7.6 TB | 2.84 Å |
| 2025-06-13 |  |
Multiple steps of dynein activation by Lis1 visualized by cryo-EM [8316 multi-frame micrographs composed of 40 frames each in EER format] | Kendrick AA, Nguyen KHV, Ma W, Karasmanis EP, Amaro RE, Reck-Peterson SL, Leschziner AE [Pubmed: 40410592] [DOI: 10.1038/s41594-025-01558-w] |
7.2 TB | 2.8 - 3.6 Å |
| 2025-06-13 |  |
Cryo-EM structure of human MPC in complex with UK5099 in nanodiscs [12760 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang J, Feng L [Pubmed: 40044865] [DOI: 10.1038/s41586-025-08667-y] |
4.8 TB | 2.73 Å |
| 2025-06-13 |  |
Cryo-EM structure of human MPC in complex with AKOS005153046 [16536 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang J, Feng L [Pubmed: 40044865] [DOI: 10.1038/s41586-025-08667-y] |
6.1 TB | 2.83 Å |
| 2025-06-12 |  |
Cryo electron tomography of PR/8/34 influenza A virus [10 tilt series in TIFF format] | Huang QJ, Song K, Schiffer CA, Somasundaran M [Pubmed: 40244672] [DOI: 10.1073/pnas.2426427122] |
26.5 GB | 8.5 - 10.0 Å |
| 2025-06-12 |  |
Cryo electron tomography of PR/8/34 influenza A virus incubated with LSTc glycan [10 tilt series in TIFF format] | Huang QJ, Song K, Schiffer CA, Somasundaran M [Pubmed: 40244672] [DOI: 10.1073/pnas.2426427122] |
37.8 GB | 8.5 - 10.0 Å |
| 2025-06-12 |  |
Microtubule dynamics are defined by conformations and stability of clustered protofilaments - growing microtubules [multiple data sets in MRC and TIFF formats] | Kalutskii M, Grubmüller H, Volkov VA, Igaev M [Pubmed: 40440074] [DOI: 10.1073/pnas.2424263122] |
152.7 GB | — |
| 2025-06-12 |  |
Cryo-EM structure of human MPC with pyruvate [13019 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang J, Feng L [Pubmed: 40044865] [DOI: 10.1038/s41586-025-08667-y] |
4.8 TB | 2.78 Å |
| 2025-06-12 |  |
Cryoelectron microscopy dataset of apo-state mjHSP16.5/lysozyme at 12:1 monomer ratio (post 75C, 2 hr) [13267 multi-frame micrographs composed of 50 frames each in TIFF format] | Miller AP, Reichow SL [Pubmed: 40240363] [DOI: 10.1038/s41467-025-58964-3] |
7.1 TB | 2.6 - 4.71 Å |
| 2025-06-12 |  |
Single particle of LRRK2 C-terminal half bound to E11 DARPin [2468 multi-frame micrographs composed of 40 frames each in MRC format] | Dederer V, Sanz Murillo M, Karasmanis EP, Hatch KS, Chatterjee D, Preuss F, Abdul Azeez KR, Nguyen LV, Galicia C, Dreier B, Plückthun A, Versees W, Mathea S, Leschziner AE, Reck-Peterson SL, Knapp S [Pubmed: 38876305] [DOI: 10.1016/j.jbc.2024.107469] |
686.1 GB | 3.7 Å |
| 2025-06-11 |  |
Single particle cryoEM dataset of nucleosomes containing H2BK120ub and H3K79me2 [7782 multi-frame micrographs composed of 40 frames each in TIFF format] | Hicks CW, Wolberger C [Pubmed: 39149911] [DOI: 10.1093/nar/gkae698] |
3.0 TB | 2.93 - 3.06 Å |
| 2025-06-11 |  |
Raw data used to generate the structure of the MIRO/TRAK complex [multiple data sets in TIFF format] | Baltrusaitis EE, Ravitch EE, Barrie KR, Dominguez R | 6.9 TB | — |
| 2025-06-11 |  |
Microtubule dynamics are defined by conformations and stability of clustered protofilaments - shortening microtubules [1576 multi-frame micrographs composed of 1 frames each in MRC format] | Kalutskii M, Grubmüller H, Volkov VA, Igaev M [Pubmed: 40440074] [DOI: 10.1073/pnas.2424263122] |
1.0 TB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-10 |  |
Cryo-ET of cryosections of S. pombe cells in G1 arrest and in G0 quiescence [20 tilt series in MRC format] | Tan ZY, Cai S, Paithankar SA, Liu T, Nie X, Shi J, Gan L [Pubmed: 40013339] [DOI: 10.1242/jcs.263654] |
439.8 GB | — |
| 2025-06-09 |  |
Horizontal cell connectivity in the anchovy retina – a 3D electron microscopic study -Scan 1 [1009 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2025-06-09 |  |
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study -Scan 2 [677 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
13.5 GB | — |
| 2025-06-09 |  |
Scan 3 according to material & methods [606 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
36.3 GB | — |
