Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some datasets are currently inaccessible or incomplete (marked as Incomplete dataset).
We are pleased to report that the following entries have been restored:
EMPIAR-10577 (New)We are still accepting requests for datasets you would like us to download first (email, inquiry).
We apologize for the inconvenience and appreciate your understanding.
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-10-07 |  |
Cryo-EM structure of the apo SPARTA (BabAgo/TIR-APAZ) complex [multiple data sets in TIFF and DM4 formats] | Finocchio G, Jinek M [Pubmed: 38224450] [DOI: 10.1093/nar/gkad1248] |
2.3 TB | 2.57 Å |
| 2026-10-07 |  |
Cryo-EM structure of PmcTnsC-dsDNA-AMPPNP in complex with PmcTnsAB hook [multiple data sets in TIFF and DM4 formats] | Finocchio G, Jinek M [Pubmed: 40103227] [DOI: 10.1093/nar/gkaf149] |
1.7 TB | 3.2 Å |
| 2026-10-07 |  |
Cryo-EM structure of PmcTnsC-dsDNA-AMPPNP [multiple data sets in TIFF and DM4 formats] | Finocchio G, Jinek M [Pubmed: 40103227] [DOI: 10.1093/nar/gkaf149] |
1.1 TB | 3.7 - 4.47 Å |
| 2026-10-07 |  |
Adaptive myelin remodeling by mature oligodendrocytes preserves white matter integrity to promote recovery after spinal cord injury [470 reconstructed volumes in TIFF format] | Liu W, Pei Y, Chen J, Ren W, Jiang Y, Wang H, Hua Y, Guan NN, Song J | 59.5 GB | — |
| 2026-10-07 |  |
Cryo-EM datasets of human Argonaute2 pre-RISC and mature RISC-target, PDB 9YM9, 9YMA, 9YMB, 9YMC, 9YMD, and 10BE [multiple data sets in TIFF and EER formats] | Zhang H, Nakanishi K [Pubmed: 42190652] [DOI: 10.1016/j.molcel.2026.04.029] |
11.9 TB | 3.02 - 3.87 Å |
| 2026-10-07 |  |
PIV3 HN protein bound to the PIV3HN-09 Fab and PIV3HN-13 Fab [12228 micrographs in MRC format] | McCaffrey KD, Esfahani BG, Elbehairy MA, McCormick AL, Mousa JJ [Pubmed: 41835395] [DOI: 10.64898/2026.03.03.709347] |
529.3 GB | 2.95 Å |
| 2026-10-07 |  |
Cryo electron tomography of yeast FIB-milled lamella after sublimation [multiple data sets in MRC format] | Bondy AL, Valentin Gese G, Thersleff T, Hallberg BM | 1.7 TB | — |
| 2026-10-07 |  |
Single particle cryo-EM dataset of influenza hemagglutinin (A/Hong Kong/1/1968, H3N2) plunged control sample [13400 multi-frame micrographs composed of 50 frames each in EER format] | Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.09.14.676144] |
5.0 TB | 3.6 Å |
| 2026-10-07 |  |
Single particle cryo-EM dataset of influenza hemagglutinin (A/Hong Kong/1/1968, H3N2) following ultrasonic excitation during plunging [12099 multi-frame micrographs composed of 50 frames each in EER format] | Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.09.14.676144] |
5.7 TB | 2.0 Å |
| 2026-10-07 |  |
PIV3 HN protein bound to 5217-2 and PIV3HN-09 Fabs [6331 micrographs in MRC format] | McCaffrey KD, Esfahani BG, Elbehairy MA, McCormick AL, Mousa JJ [Pubmed: 41835395] [DOI: 10.64898/2026.03.03.709347] |
1.1 TB | 3.29 Å |
| 2026-10-07 |  |
Single-particle cryo electron microscopy of Integrin a4b7 bound to act1 fab [1510 multi-frame micrographs composed of 100 frames each in TIFF format] | Hollis JA, Campbell MG | 1.6 TB | 2.85 Å |
| 2026-10-07 |  |
2026 CAHRA Challenge 1) Compositional Heterogeneity [5200 multi-frame micrographs composed of 945 frames each in EER format] | Feathers JR, Zhong ED, Heeter R, Woollard G, Hanson SM, Cossio P, Greer JAT, Burnley T [DOI: 10.64898/2026.09.15.751515] |
9.6 TB | — |
| 2026-10-07 |  |
Cryo-EM Structure of PRMT5/MEP50/etravirine Complex [6458 multi-frame micrographs composed of 40 frames each in TIFF format] | Xu X, Li C, Jiang W, Hu CD [Pubmed: 42710907] [DOI: 10.1080/14756366.2026.2727844] |
3.0 TB | 3.1 Å |
| 2026-10-07 |  |
Cryo-EM dataset of human UAP56–LENG8–PCID2–SEM1 complex in the presence of 15U RNA and ATP [multiple data sets in MRC format] | Hohmann U, Graf M, Plaschka C, Vorländer M [Pubmed: 42310446] [DOI: 10.1038/s41586-026-10650-0] |
822.3 GB | 3.5 - 4.86 Å |
| 2026-10-07 |  |
Cryo-EM dataset of human UAP56–TREX-2 complex in the presence of 15U RNA and AMP-PNP [multiple data sets in MRC format] | Hohmann U, Graf M, Plaschka C, Vorländer M [Pubmed: 41198879] [DOI: 10.1038/s41586-025-09832-z] |
1.1 TB | 3.5 - 4.22 Å |
| 2026-10-07 |  |
Cryo-EM dataset of human UAP56–LENG8–PCID2–SEM1 complex in the presence of 15U RNA and AMP-PNP [5495 micrographs in MRC format] | Hohmann U, Graf M, Plaschka C, Vorländer MK [Pubmed: 42310446] [DOI: 10.1038/s41586-026-10650-0] |
343.4 GB | 6.2 Å |
| 2026-10-07 |  |
Trm10-tRNA complex [26645 tilt series in TIFF format] | Nandi S [Pubmed: 41427370] [DOI: 10.64898/2025.12.12.694034] |
12.0 TB | 3.37 - 3.89 Å |
| 2026-10-06 |  |
CARD1 ectodomain H197A/H199A/H222A mutant [9304 multi-frame micrographs composed of 40 frames each in TIFF format] | Fukuda Y, Ishihama N, Laohavisit A [Pubmed: 42151134] [DOI: 10.1038/s41467-026-72573-8] |
1.3 TB | 3.26 Å |
| 2026-10-06 |  |
OPC51803-bound V2R-BRIL with Fab [10904 multi-frame micrographs composed of 48 frames each in TIFF format] | Kojima A, Kawakami K, Kobayashi K, Matsui TE, Fukuda M, Kato HE [DOI: 10.64898/2026.04.02.716066] |
2.3 TB | 3.31 Å |
| 2026-10-06 |  |
tolvaptan-bound V2R-BRIL with and without Fab [multiple data sets in TIFF format] | Kojima A, Kawakami K, Kobayashi K, Matsui TE, Fukuda M, Kato HE [DOI: 10.64898/2026.04.02.716066] |
5.5 TB | 2.89 - 3.02 Å |
| 2026-10-06 |  |
icatibant-bound B2R-BRIL with Fab [multiple data sets in TIFF format] | Kojima A, Kawakami K, Kobayashi K, Matsui TE, Gu Y, Fukuda M, Kato HE [DOI: 10.64898/2026.04.02.716066] |
2.7 TB | 3.29 - 3.69 Å |
| 2026-10-06 |  |
GLPG0974-bound FFA2-ARK1 [10213 multi-frame micrographs composed of 48 frames each in TIFF format] | Kojima A, Kawakami K, Narita TJ, Kugawa M, Fukuda M, Kato HE [Pubmed: 42665663] [DOI: 10.1038/s41594-026-01869-6] |
2.2 TB | 2.93 Å |
| 2026-10-06 |  |
The Cryo-EM structure of human tRNA methyltransferase FTSJ1-THADA with substrate tRNA and S-adenosyl homocysteine (SAH) [22969 multi-frame micrographs composed of 48 frames each in TIFF format] | Ishiguro K, Fujimura A, Shirouzu M [Pubmed: 40483304] [DOI: 10.1038/s42003-025-08278-3] |
5.1 TB | 2.66 Å |
| 2026-10-06 |  |
Target DNA-bound type I-F3 TniQ-Cascade of Vibrio parahaemolyticus [multiple data sets in TIFF format] | Ishihara K, Matsumoto S, Gerle C, Gopalasingam CC, Shigematsu H, Shirai T, Numata T [Pubmed: 41495894] [DOI: 10.1093/nar/gkaf1415] |
4.3 TB | 2.68 - 2.89 Å |
| 2026-10-06 |  |
The cryo-EM structure of HerA-NurA complex from Thermococcus kodakarensis [multiple data sets in TIFF format] | Uda K, Numata T [Pubmed: 41641993] [DOI: 10.1128/mbio.03523-25] |
4.7 TB | 2.3 - 3.1 Å |
