Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-06-12 |  |
Cryoelectron microscopy dataset of apo-state mjHSP16.5/lysozyme at 12:1 monomer ratio (post 75C, 2 hr) [13267 multi-frame micrographs composed of 50 frames each in TIFF format] | Miller AP, Reichow SL [Pubmed: 40240363] [DOI: 10.1038/s41467-025-58964-3] |
7.1 TB | 2.6 - 4.71 Å |
| 2025-06-12 |  |
Single particle of LRRK2 C-terminal half bound to E11 DARPin [2468 multi-frame micrographs composed of 40 frames each in MRC format] | Dederer V, Sanz Murillo M, Karasmanis EP, Hatch KS, Chatterjee D, Preuss F, Abdul Azeez KR, Nguyen LV, Galicia C, Dreier B, Plückthun A, Versees W, Mathea S, Leschziner AE, Reck-Peterson SL, Knapp S [Pubmed: 38876305] [DOI: 10.1016/j.jbc.2024.107469] |
686.1 GB | 3.7 Å |
| 2025-06-11 |  |
Single particle cryoEM dataset of nucleosomes containing H2BK120ub and H3K79me2 [7782 multi-frame micrographs composed of 40 frames each in TIFF format] | Hicks CW, Wolberger C [Pubmed: 39149911] [DOI: 10.1093/nar/gkae698] |
3.0 TB | 2.93 - 3.06 Å |
| 2025-06-11 |  |
Raw data used to generate the structure of the MIRO/TRAK complex [multiple data sets in TIFF format] | Baltrusaitis EE, Ravitch EE, Barrie KR, Dominguez R | 6.9 TB | — |
| 2025-06-11 |  |
Microtubule dynamics are defined by conformations and stability of clustered protofilaments - shortening microtubules [1576 multi-frame micrographs composed of 1 frames each in MRC format] | Kalutskii M, Grubmüller H, Volkov VA, Igaev M [Pubmed: 40440074] [DOI: 10.1073/pnas.2424263122] |
1.0 TB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-11 |  |
Electron cryotomography of thin edges of U2OS cells using a 200 kV cryoTEM [1 tilt series in MRC format] | Szwedziak P [DOI: 10.1101/2024.12.06.627167] |
1.2 GB | — |
| 2025-06-10 |  |
Cryo-ET of cryosections of S. pombe cells in G1 arrest and in G0 quiescence [20 tilt series in MRC format] | Tan ZY, Cai S, Paithankar SA, Liu T, Nie X, Shi J, Gan L [Pubmed: 40013339] [DOI: 10.1242/jcs.263654] |
439.8 GB | — |
| 2025-06-09 |  |
Horizontal cell connectivity in the anchovy retina – a 3D electron microscopic study -Scan 1 [1009 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2025-06-09 |  |
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study -Scan 2 [677 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
13.5 GB | — |
| 2025-06-09 |  |
Scan 3 according to material & methods [606 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
36.3 GB | — |
| 2025-06-09 |  |
Scan 4b according to material & methods [319 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
11.4 GB | — |
| 2025-06-09 |  |
Scan 6 according to material & methods [972 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
6.4 GB | — |
| 2025-06-09 |  |
Scan 5 part 2 according to material & methods [272 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
1.0 GB | — |
| 2025-06-06 |  |
Micrographs of E. coli CsgA fibril [6000 multi-frame micrographs composed of 40 frames each in TIFF format] [6000 multi-frame micrographs composed of 40 frames each in TIFF format] | Bu F, Dee D, Liu B [Pubmed: 38501920] [DOI: 10.1128/mbio.00419-24] |
977.3 GB | 3.6 - 3.8 Å |
| 2025-06-05 |  |
Single particle cryoEM data of spinach cytochrome b6f with inhibitor DBMIB bound in quinol oxidation site (Qp) [3027 multi-frame micrographs composed of 40 frames each in TIFF format] | Pintscher S, Pietras R, Mielecki B, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A [Pubmed: 39362993] [DOI: 10.1038/s41477-024-01804-x] |
1.1 TB | 2.33 Å |
| 2025-06-05 |  |
E. coli BAM complex bound to SurA [15993 multi-frame micrographs composed of 47 frames each in TIFF format] | Fenn KF, Ranson NA [Pubmed: 39218969] [DOI: 10.1038/s41467-024-51358-x] |
8.2 TB | 4.1 - 4.2 Å |
| 2025-06-03 |  |
Cryo-EM structure of human MPC in complex with TZD [7457 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang J, Feng L [Pubmed: 40044865] [DOI: 10.1038/s41586-025-08667-y] |
3.1 TB | 3.35 Å |
| 2025-06-02 |  |
Single-particle cryo-EM dataset of the glycosyltransferase ArnC from Salmonella enterica in the apo state from Krios microscope [multiple data sets in TIFF and MRC formats] | Ashraf KU, Punetha A, Kaelber JT, Petrou VI [Pubmed: 39974898] [DOI: 10.1101/2025.01.29.634835] |
5.9 TB | 2.74 Å |
| 2025-06-02 |  |
full length AP5:SPG11-SPG15 [10869 micrographs in MRC format] | Mai X., Su M.-Y., Stjepanovic G. [Pubmed: 40175557] [DOI: 10.1038/s41594-025-01500-0] |
954.4 GB | 3.3 Å |
| 2025-06-02 |  |
SPG11-SPG15 [6660 micrographs in MRC format] | Mai X., Su M.-Y., Stjepanovic G. [Pubmed: 40175557] [DOI: 10.1038/s41594-025-01500-0] |
584.8 GB | 4.02 Å |
| 2025-06-02 |  |
SPG11-SPG15 [6849 micrographs in MRC format] | Mai X., Su M.-Y., Stjepanovic G. [Pubmed: 40175557] [DOI: 10.1038/s41594-025-01500-0] |
601.4 GB | 4.02 Å |
