Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Currently, due to a storage failure, some datasets are either inaccessible or incomplete (Marked: Incomplete dataset).
We are restoring them in ascending order of EMPIAR-ID.
If there are any entries mirrored on PDBj that are particularly urgent, we are accepting requests (email, inquiry).
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-10-29 |  |
Cryo‑EM micrographs and particle stacks for the antagonist 1-SSTR5 complex [4619 multi-frame micrographs composed of 36 frames each in MRC format] | Li Y, Xing Z, Hu W, Wu K, Xu HE, Zhao LH [Pubmed: 41417603] [DOI: 10.1073/pnas.2522515122] |
288.7 GB | 2.59 Å |
| 2026-10-29 |  |
Ap4A bound in de novo transcription initiation T. thermophilus RNA polymerase complex with TC DNA template [multiple data sets in TIFF format] | Serianni VM, Skerlova J, Dubankova AK, Skriba A, Svachova H, Vuckova T, Filimonenko A, Fabry M, Rezacova P, Kouba T, Cahova H [Pubmed: 41513851] [DOI: 10.1038/s41589-025-02134-5] |
9.2 TB | 2.66 Å |
| 2026-10-29 |  |
Cryo-EM of E. coli RNA polymerase initial transcribing complexes on T7A1 promoter [multiple data sets in TIFF format] | Mueller AU, Darst SA [Pubmed: 42066755] [DOI: 10.1016/j.molcel.2026.03.033] |
15.2 TB | 2.5 - 3.1 Å |
| 2026-10-29 |  |
Cryo‑EM micrographs for the S5A1-SSTR5 complex [3172 micrographs in MRC format] | Li Y, Xing Z, Hu W, Wu K, Xu HE, Zhao LH [Pubmed: 41417603] [DOI: 10.1073/pnas.2522515122] |
198.3 GB | 2.69 Å |
| 2026-10-28 |  |
Single-particle cryo-EM of gelsolin fragment G2G3 bound to F-actin [multiple data sets in TIFF format] [multiple data sets in TIFF format] | Saks AJ, Boczkowska M, Barrie KR, Robinson RC, Dominguez R [Pubmed: 42567514] [DOI: 10.1016/j.jbc.2026.113413] |
6.3 TB | 2.76 - 3.44 Å |
| 2026-10-26 |  |
Design and structure of protein cages based on helical fusion and machine learning T33-Fus1B [4584 multi-frame micrographs composed of 1694 frames each in EER format] | San Segundo-Acosta P, Le Coq J, Boskovic J, Aglietti RA, Bowers P, Yeates TO, Castells-Graells R [DOI: 10.1021/jacs.6c11491] |
2.9 TB | 4.2 Å |
| 2026-10-26 |  |
Structre of ANDV spike in complex with EC1 domain of human PCDH1 [29308 micrographs in MRC format] | Battini LB, Guardado-Calvo PGC [DOI: 10.1038/s41586-026-11184-1] |
915.9 GB | 2.55 Å |
| 2026-10-26 |  |
Split Ring DNA Origami Structure [1116 multi-frame micrographs composed of 61 frames each in MRC format] | Heikkilä ES, Kipnis A, Lautamatti T, Natarajan AK, Kuzyk A | 4.2 TB | 19.0 Å |
| 2026-10-26 |  |
Complex of the phosphorylated human cystic fibrosis transmembrane conductance regulator (CFTR) with (R)-BPO-27 and ATP/Mg [7696 micrographs in MRC format] | Young PG, Fiedorczuk K, Chen J [Pubmed: 40750590] [DOI: 10.1038/s41467-025-62199-7] |
676.4 GB | 2.1 Å |
| 2026-10-23 |  |
aligned FIB-SEM stack of Waminoa sp. acoel worm hosting dinoflagellate symbionts [4342 micrographs in TIFF format] | Zhong G, Toullec G, Jouneau P.-H., Decelle J, Prakash M [DOI: 10.1101/2025.06.08.658386] |
164.9 GB | — |
| 2026-10-23 |  |
Design and structure of protein cages based on helical fusion and machine learning T33-Fus2 [4084 multi-frame micrographs composed of 1680 frames each in EER format] | San Segundo-Acosta P, Le Coq J, Boskovic J, Aglietti RA, Bowers P, Yeates TO, Castells-Graells R [DOI: 10.1021/jacs.6c11491] |
2.6 TB | 5.11 Å |
| 2026-10-23 |  |
Design and structure of protein cages based on helical fusion and machine learning T33-Fus1A [4170 multi-frame micrographs composed of 1680 frames each in EER format] | San Segundo-Acosta P, Le Coq J, Boskovic J, Aglietti RA, Bowers P, Yeates TO, Castells-Graells R [DOI: 10.1021/jacs.6c11491] |
2.7 TB | 3.61 Å |
| 2026-10-23 |  |
GBSV1 portal protein without the N-terminal tail [4704 multi-frame micrographs composed of 1155 frames each in EER format] | Chong PJ, Chechik M, Jenkins HT, Greive S, Antson AA | 1.5 TB | 2.7 Å |
| 2026-10-22 |  |
Cryo-electron tomography data collected in the nucleolus of HeLa cells on cryo-FIB lamellae [multiple data sets in TIFF and MRC formats] | Zhao X, Mahamid J, Müller CW [Pubmed: 42784657] [DOI: 10.1126/science.aej0483] |
1.8 TB | 6.9 - 19.4 Å |
| 2026-10-21 |  |
Single-particle cryo-EM dataset of monomeric Photosystem I structure at 1.8 A resolution [22001 multi-frame micrographs composed of 40 frames each in TIFF format] | Gaullier G, Boyka J, Zouni A, Blikstad C [Pubmed: 42881318] [DOI: 10.1007/s11120-026-01237-x] |
5.3 TB | 1.74 Å |
| 2026-10-21 |  |
Focused ion beam-scanning electron microscopy volume of the C. elegans -1 oocyte and surrounding tissue in zarr2 format [5985 micrographs in BIG DATA VIEWER HDF5 format] | Lazureanu DG, Krueger EW, Qiu W, Kopley-Smith AA, Smith CS, Aquino AP, Lele A, Voloshchuk N, Cortes DB, Park M, Uryo H, Silva M, Trautman E, Innerberger M, Preibisch S, Vaxenburg R, Stark A, Bleck CKE, Reilly M, Wang MC, Shroff H, McNally FJ [DOI: 10.64898/2026.10.07.757430] |
591.1 GB | — |
| 2026-10-20 |  |
Focused ion beam-scanning electron microscopy volume of the C. elegans -7 oocyte and surrounding tissue in zarr format [5694 micrographs in BIG DATA VIEWER HDF5 format] | Lazureanu DG, Krueger EW, Qiu W, Kopley-Smith AA, Smith CS, Aquino AP, Lele A, Voloshchuk N, Cortes DB, Park M, Uryo H, Silva M, Trautman E, Innerberger M, Preibisch S, Vaxenburg R, Stark A, Bleck CKE, Reilly M, Wang MC, Shroff H, McNally FJ [DOI: 10.64898/2026.10.07.757430] |
842.7 GB | — |
| 2026-10-20 |  |
Cryo-EM movies of the SUSP1 VIPR ternary complex with an ssDNA substrate [5314 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
1.8 TB | 3.0 - 3.1 Å |
| 2026-10-20 |  |
Cryo-EM movies of the SUSP1 VIPR binary complex [6174 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
— | 2.68 - 2.85 Å |
| 2026-10-19 |  |
Cryo electron microscopy of attPsym-bound large serine integrase and RDF dimer complex [4726 multi-frame micrographs composed of 54 frames each in TIFF format] | Rice PA, Olorunniji FJ, Shin H [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
1.5 TB | 3.31 - 6.61 Å |
| 2026-10-19 |  |
Cryo electron microscopy of attLsym-bound large serine integrase dimer complex [6131 multi-frame micrographs composed of 54 frames each in TIFF format] | Shin H, Olorunniji F, Rice PA [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
2.0 TB | 4.16 - 7.1 Å |
| 2026-10-19 |  |
Cryo electron microscopy of large serine integrase during integrative pathway [1768 multi-frame micrographs composed of 65 frames each in TIFF format] | Shin H, Olorunniji FJ, Rice PA [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
5.0 TB | 3.31 - 7.1 Å |
| 2026-10-16 |  |
Cryo electron microscopy of large serine integrase and RDF complex during excisive pathway [3215 multi-frame micrographs composed of 54 frames each in TIFF format] | Rice PA, Olorunniji FJ, Shin H [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
690.0 GB | 3.31 - 7.1 Å |
| 2026-10-16 |  |
JMV449-NTSR1-Gi in 8 seconds following the GDP addition [14217 multi-frame micrographs composed of 48 frames each in TIFF format] | Kobayashi K, Kawakami K, Matsui TE, Fukuda M, Yamashita K, Kobilka BK, Kato HE [Pubmed: 41813902] [DOI: 10.1038/s41586-026-10228-w] |
2.8 TB | 3.02 - 3.65 Å |
| 2026-10-16 |  |
Cryo-EM movies of the P. fulva VIPR ternary complex [multiple data sets in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
1.7 TB | 2.5 - 2.8 Å |
