Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-07-01 |  |
CryoEM dataset of Cas12j3 (Casphi3) in complex with crRNA and target DNA after cleavage (postcatalytic state) [4445 multi-frame micrographs composed of 40 frames each in MRC format] | Carabias A, Fuglsang A, Temperini P, Pape T, Sofos N, Stella S, Erlendsson S, Montoya G [Pubmed: 34294706] [DOI: 10.1038/s41467-021-24707-3] |
5.6 TB | 2.66 Å |
| 2025-07-01 |  |
CryoEM dataset of Retron-Eco1 WT filaments in the presence of NAD+ [multiple data sets in MRC format] | Carabias A, Camara-Wilpert S, Mestre MR, Lopéz-Méndez B, Hendriks IA, Zhao R, Pape T, Fuglsang A, Luk SH, Nielsen ML, Pinilla-Redondo R, Montoya G [Pubmed: 38788717] [DOI: 10.1016/j.molcel.2024.05.001] |
9.9 TB | 2.99 - 3.13 Å |
| 2025-07-01 |  |
CryoEM dataset of Retron-Eco1 E106A filaments [7748 multi-frame micrographs composed of 40 frames each in MRC format] | Carabias A, Camara-Wilpert S, Mestre MR, Lopéz-Méndez B, Hendriks IA, Zhao R, Pape T, Fuglsang A, Luk SH, Nielsen ML, Pinilla-Redondo R, Montoya G [Pubmed: 38788717] [DOI: 10.1016/j.molcel.2024.05.001] |
9.7 TB | — |
| 2025-06-30 |  |
Cryo-Electron Tomography Data and Comprehensive Annotation of C. elegans Centrosomes in Interphase and Mitosis [multiple data sets in MRC and TIFF formats] | Tollervey F [Pubmed: 39721584] [DOI: 10.1016/j.devcel.2024.12.002] |
111.4 GB | 26.0 - 44.0 Å |
| 2025-06-30 |  |
TnsB strand transfer complex micrographs [4728 multi-frame micrographs composed of 1 frames each in MRC format] | Tenjo-Castaño F, Sofos N, López-Méndez B, Stutzke LS, Fuglsang A, Stella S, Montoya G [Pubmed: 36184667] [DOI: 10.1038/s41467-022-33504-5] |
7.9 TB | 2.46 Å |
| 2025-06-30 |  |
FIB-SEM Chinese Hamster Ovary cell line sample dataset [multiple data sets in TIFF and PNG formats] | Slamková D., Hurník Konečná T [DOI: 10.1016/bs.mcb.2023.04.008] |
1.3 GB | — |
| 2025-06-30 |  |
FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats] | Slamková D., Hurník Konečná T, Sviben S | 10.8 GB | — |
| 2025-06-30 |  |
FIB-SEM Nicotiana benthamiana epidermal cell - conventional acquisition [200 reconstructed volumes in TIFF format] | Czymmek KJ, Burch-Smith T, Hurník Konečná T [DOI: 10.1016/bs.mcb.2023.04.008] |
7.5 GB | — |
| 2025-06-30 |  |
Single particle cryo-EM micrographs of ROOL RNA nanocage [multiple data sets in MRC format] | Kretsch RC, Wu Y, Shabalina SA, Lee H, Nye G, Koonin EV, Gao A, Chiu W, Das R [Pubmed: 40328315] [DOI: 10.1038/s41586-025-09073-0] |
372.0 GB | 3.1 Å |
| 2025-06-30 |  |
Single particle cryo-EM micrographs of GOLLD RNA nanocage [multiple data sets in MRC format] | Kretsch RC, Wu Y, Shabalina SA, Lee H, Nye G, Koonin EV, Gao A, Chiu W, Das R [Pubmed: 40328315] [DOI: 10.1038/s41586-025-09073-0] |
744.3 GB | 3.0 Å |
| 2025-06-30 |  |
CryoEM movies of human hemoglobin (Hb) in the presence of 5 mM sodium dithionite under Al's oil [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
1.2 TB | 2.37 - 2.52 Å |
| 2025-06-30 |  |
CryoEM movies of human hemoglobin (Hb) in the presence of 20 mM sodium dithionite under Al's oil [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
3.0 TB | 2.72 Å |
| 2025-06-30 |  |
CryoEM movies of human hemoglobin (Hb) in the presence of 60 mM sodium dithionite under Al's oil [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
1.5 TB | 2.61 - 2.75 Å |
| 2025-06-30 |  |
CryoEM movies of the catalytic subunit of Mo-nitrogenase (MoFeP) from Azotobacter vinelandii [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
1.6 TB | 2.39 - 2.51 Å |
| 2025-06-30 |  |
CryoEM movies of the catalytic subunit of Mo-nitrogenase (MoFeP) from Azotobacter vinelandii in the presence of 5 mM sodium dithionite under Al's oil [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
1.4 TB | 2.19 - 2.33 Å |
| 2025-06-30 |  |
CryoEM movies of the catalytic subunit of Mo-nitrogenase (MoFeP) from Azotobacter vinelandii in the presence of 20 mM sodium dithionite under Al's oil [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
1.3 TB | 2.08 - 2.19 Å |
| 2025-06-30 |  |
CryoEM movies of the catalytic subunit of Mo-nitrogenase (MoFeP) from Azotobacter vinelandii in the presence of 60 mM sodium dithionite under Al's oil [multiple data sets in EER and MRC formats] | Cook BD, Herzik Jr MA [Pubmed: 40229244] [DOI: 10.1038/s41467-025-58243-1] |
1.3 TB | 2.08 - 2.19 Å |
| 2025-06-30 |  |
CRISPR-associated transposon post-transposition complex preliminary micrographs [1717 multi-frame micrographs composed of 40 frames each in MRC format] | Tenjo-Castaño F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G [Pubmed: 38834066] [DOI: 10.1016/j.molcel.2024.05.005] |
3.4 TB | 2.3 Å |
| 2025-06-30 |  |
CryoEM dataset of Retron-Eco1 "-1-turn" mutant filaments in the presence of NAD+ [28871 multi-frame micrographs composed of 40 frames each in EER format] | Carabias A, Camara-Wilpert S, Mestre MR, Lopéz-Méndez B, Hendriks IA, Zhao R, Pape T, Fuglsang A, Luk SH, Nielsen ML, Pinilla-Redondo R, Montoya G [Pubmed: 38788717] [DOI: 10.1016/j.molcel.2024.05.001] |
12.8 TB | 2.43 Å |
| 2025-06-28 |  |
Single particle cryo-EM of human CST bound to POT1(ESDL)/TPP1 in the absence of telomeric ssDNA [15201 micrographs in MRC format] | Cai SW, Takai H, Zaug AJ, Dilgen TC, Cech TR, Walz T, de Lange T [Pubmed: 38838667] [DOI: 10.1016/j.cell.2024.05.002] |
1.3 TB | 3.8 Å |
| 2025-06-28 |  |
Single particle cryo-EM of human CST bound to POT1(ESDL)/TPP1 in the presence of telomeric ssDNA [21633 micrographs in MRC format] | Cai SW, Takai H, Zaug AJ, Dilgen TC, Cech TR, Walz T, de Lange T [Pubmed: 38838667] [DOI: 10.1016/j.cell.2024.05.002] |
1.9 TB | 4.1 Å |
| 2025-06-28 |  |
Multiple steps of dynein activation by Lis1 visualized by cryo-EM [multiple data sets in EER format] | Kendrick AA, Nguyen KHV, Ma W, Karasmanis EP, Amaro RE, Reck-Peterson SL, Leschziner AE [Pubmed: 40410592] [DOI: 10.1038/s41594-025-01558-w] |
5.6 TB | 3.0 - 3.7 Å |
| 2025-06-27 |  |
Cryo-EM structures of TUG-1375/4-CMTB-bound active FFA2 and GLPG0974-bound inactive FFA2 [multiple data sets in TIFF format] | Kugawa M, Kawakami K, Kise R, Suomivuori CM, Tsujimura M, Kobayashi K, Kojima A, Inoue WJ, Fukuda M, Matsui TE, Fukunaga A, Kobayashi J, Kim S, Ikeda H, Yamashita K, Saito K, Ishikita H, Dror RO, Inoue A, Kato HE [Pubmed: 40140663] [DOI: 10.1038/s41467-025-57983-4] |
5.7 TB | 3.19 - 3.36 Å |
| 2025-06-27 |  |
PSI-LHCI supercomplex binding with Lhcas from C. subellipsoidea [multiple data sets in EER and MRC formats] | Tsai P.-C., Kato K., Shen J.-R., Akita F. [Pubmed: 39947506] [DOI: 10.1016/j.bbabio.2025.149543] |
8.0 TB | 1.92 - 2.06 Å |
| 2025-06-27 |  |
Structure of the 55LCC ATPase complex [multiple data sets in EER and MRC formats] | Foglizzo M, Degtjarik O, Zeqiraj E [Pubmed: 38554706] [DOI: 10.1016/j.cell.2024.03.002] |
9.7 TB | 4.5 Å |
