Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some datasets are currently inaccessible or incomplete (marked as Incomplete dataset).
We are pleased to report that the following entries have been restored:
EMPIAR-10577 (New)We are still accepting requests for datasets you would like us to download first (email, inquiry).
We apologize for the inconvenience and appreciate your understanding.
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-10-20 |  |
Focused ion beam-scanning electron microscopy volume of the C. elegans -7 oocyte and surrounding tissue in zarr format [5694 micrographs in BIG DATA VIEWER HDF5 format] | Lazureanu DG, Krueger EW, Qiu W, Kopley-Smith AA, Smith CS, Aquino AP, Lele A, Voloshchuk N, Cortes DB, Park M, Uryo H, Silva M, Trautman E, Innerberger M, Preibisch S, Vaxenburg R, Stark A, Bleck CKE, Reilly M, Wang MC, Shroff H, McNally FJ [DOI: 10.64898/2026.10.07.757430] |
842.7 GB | — |
| 2026-10-20 |  |
Cryo-EM movies of the SUSP1 VIPR ternary complex with an ssDNA substrate [5314 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
1.8 TB | 3.0 - 3.1 Å |
| 2026-10-20 |  |
Cryo-EM movies of the SUSP1 VIPR binary complex [6174 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
— | 2.68 - 2.85 Å |
| 2026-10-19 |  |
Cryo electron microscopy of attPsym-bound large serine integrase and RDF dimer complex [4726 multi-frame micrographs composed of 54 frames each in TIFF format] | Rice PA, Olorunniji FJ, Shin H [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
1.5 TB | 3.31 - 6.61 Å |
| 2026-10-19 |  |
Cryo electron microscopy of attLsym-bound large serine integrase dimer complex [6131 multi-frame micrographs composed of 54 frames each in TIFF format] | Shin H, Olorunniji F, Rice PA [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
2.0 TB | 4.16 - 7.1 Å |
| 2026-10-19 |  |
Cryo electron microscopy of large serine integrase during integrative pathway [1768 multi-frame micrographs composed of 65 frames each in TIFF format] | Shin H, Olorunniji FJ, Rice PA [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
5.0 TB | 3.31 - 7.1 Å |
| 2026-10-16 |  |
Cryo electron microscopy of large serine integrase and RDF complex during excisive pathway [3215 multi-frame micrographs composed of 54 frames each in TIFF format] | Rice PA, Olorunniji FJ, Shin H [Pubmed: 39803483] [DOI: 10.1101/2025.01.03.631226] |
690.0 GB | 3.31 - 7.1 Å |
| 2026-10-16 |  |
JMV449-NTSR1-Gi in 8 seconds following the GDP addition [14217 multi-frame micrographs composed of 48 frames each in TIFF format] | Kobayashi K, Kawakami K, Matsui TE, Fukuda M, Yamashita K, Kobilka BK, Kato HE [Pubmed: 41813902] [DOI: 10.1038/s41586-026-10228-w] |
2.8 TB | 3.02 - 3.65 Å |
| 2026-10-16 |  |
Cryo-EM movies of the P. fulva VIPR ternary complex [multiple data sets in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
1.7 TB | 2.5 - 2.8 Å |
| 2026-10-16 |  |
Cryo-EM movies of the SUSP1 VIPR ternary complex with a pre-unwound dsDNA substrate [5253 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
1.7 TB | 3.13 - 3.17 Å |
| 2026-10-16 |  |
Cryo-EM structure of DDM1-HELLS chimera bound to the nucleosome [7808 multi-frame micrographs composed of 40 frames each in EER format] | Nartey W, Williams GJ | 3.4 TB | 3.5 - 3.7 Å |
| 2026-10-15 |  |
Cryo-EM movies of the SUSP1 VIPR ternary complex with an ssRNA substrate [5335 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZT, Docter TA, Yoon PH, Brohawn SG, Doudna JA [Pubmed: 42752121] [DOI: 10.1126/science.aei3472] |
1.7 TB | 2.76 - 2.94 Å |
| 2026-10-09 |  |
Capped F-actin raw data from Mechanism of Actin Thin Filament Pointed-End Elongation by Leiomodin [multiple data sets in TIFF format] | Brotzman SB, Palmer NJ, Boczkowska M, Dominguez R [Pubmed: 42477379] [DOI: 10.1038/s41467-026-74810-6] |
29.4 TB | 2.06 - 4.06 Å |
| 2026-10-09 |  |
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution [6144 multi-frame micrographs composed of 40 frames each in TIFF format] | Soichiro S, Kubota M, Ishii A, Kim E, Tomoko M, Hideaki T, Keiichi N, Genji K, Minagawa J, Ritsuko F [Pubmed: 41249568] [DOI: 10.1038/s42003-025-08977-x] |
3.5 TB | 1.94 Å |
| 2026-10-09 |  |
Cryo-EM of Ca2+ treated Connexin-46/50 in amphipol [7646 multi-frame micrographs composed of 45 frames each in TIFF format] | Flores JA, O’Neill SE, Haddad BG, Jarodsky JM, Reichow SL [DOI: 10.1038/s41467-026-77891-5] |
2.6 TB | 3.3 Å |
| 2026-10-08 |  |
In extracto cryo-EM reveals eEF2 as a major hibernation factor on 60S and 80S particles [multiple data sets in MRC format] | Seraj Z, Zottig X, Huang C-Y, Loveland A, Diggs S, Sholi E, Grigorieff N, Korostelev A [Pubmed: 42689549] [DOI: 10.7554/eLife.110114] |
4.7 TB | 2.4 - 3.1 Å |
| 2026-10-08 |  |
Cryo-EM movies of the CCL19-CCR7-Gi-scFv16 complex [20142 multi-frame micrographs composed of 50 frames each in TIFF format] | Nishikawa K, Fujiyoshi Y, Tsutsumi N [Pubmed: 42054364] [DOI: 10.1073/pnas.2533975123] |
4.3 TB | 3.0 Å |
| 2026-10-08 |  |
Cryo-EM movies of the CCL21-CCR7-Gi-scFv16 complex [6075 multi-frame micrographs composed of 50 frames each in TIFF format] | Nishikawa K, Fujiyoshi Y, Tsutsumi N [Pubmed: 42054364] [DOI: 10.1073/pnas.2533975123] |
1.3 TB | 3.2 Å |
| 2026-10-08 |  |
Single-particle cryo electron microscopy of Integrin aEb7 bound to Bly7 fab [4776 multi-frame micrographs composed of 100 frames each in TIFF format] | Hollis JA, Campbell MG | 5.0 TB | 2.8 Å |
| 2026-10-08 |  |
Cryo-EM of Mtb RNAP elongation complex (substrate loading mimic) with AAP-SO2 [28412 multi-frame micrographs composed of 35 frames each in TIFF format] | Dhingra Y., Landick R., Campbell E.A., Darst S.A. [Pubmed: 42378287] [DOI: 10.1073/pnas.2609228123] |
4.8 TB | 3.0 Å |
| 2026-10-07 |  |
Rabbit ryanodine receptor type 1 complexed with FKBP12.6, calmodulin, ADP, 4-chloro-m-cresol, and caffeine [9130 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim K, Clarke OB [DOI: 10.1038/s41467-026-76519-y] |
2.3 TB | 2.08 - 2.52 Å |
| 2026-10-07 |  |
Rabbit ryanodine receptor type 1 complexed with FKBP12.6, calmodulin, dantrolene, ATP, 4-chloro-m-cresol, and caffeine [5959 multi-frame micrographs composed of 40 frames each in TIFF format] | Kim K, Clarke OB [DOI: 10.1038/s41467-026-76519-y] |
1.1 TB | 2.49 - 3.09 Å |
| 2026-10-07 |  |
Rabbit ryanodine receptor type 1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene and Mg2+ [3954 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim K, Clarke OB [DOI: 10.1038/s41467-026-76519-y] |
868.8 GB | 2.96 - 3.09 Å |
| 2026-10-07 |  |
Single particle Cryo-EM structure of the MacAB-TolC efflux pump complexes reconstituted in peptidiscs with their respective YbjP lipoprotein partners. [5399 multi-frame micrographs composed of 1 frames each in TIFF format] | Horne J, Kaplan E, Jin B, Abbott K, Flores V, Petsolari E, Gradon J, Ntsogo Y, Harris A, Yu D, Zarkan A, Luisi BF [Pubmed: 41984076] [DOI: 10.7554/eLife.110666] |
2.3 TB | 2.48 Å |
| 2026-10-07 |  |
Prefusion-stabilized Hendra virus fusion protein in complex with inhibitory nanobody F130 [3721 multi-frame micrographs composed of 45 frames each in TIFF format] | Králová A, Hanke L | 665.9 GB | 2.6 Å |
