EMPIAR-PDBj - Electron Microscopy Public Image Archive

ストレージ復旧に関する情報 (Updated: 2026年4月10日10:22)

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大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。

Release date	Imageset	Title	Authors and references	Size	Resolution
2026-05-24	EMPIAR-10958	Two-dimensional analysis of human CRP [stack of 6561 particles in MRC format]	Cheng B, Lv JM, Liang YL, Zhu L, Huang XP, Li HY, Potempa LA, Ji SR, Wu Y [Pubmed: 35338247] [DOI: 10.1038/s42003-022-03220-3]	2.4 GB	—
2026-05-24	EMPIAR-10959	Two-dimensional analysis of rat CRP [21 micrographs in MRC format]	Cheng B, Lv JM, Liang YL, Zhu L, Huang XP, Li HY, Potempa LA, Ji SR, Wu Y [Pubmed: 35338247] [DOI: 10.1038/s42003-022-03220-3]	1.3 GB	—
2026-05-24	EMPIAR-10960	Two-dimensional analysis of mouse CRP [22 micrographs in MRC format]	Cheng B, Lv JM, Liang YL, Zhu L, Huang XP, Li HY, Potempa LA, Ji SR, Wu Y [Pubmed: 35338247] [DOI: 10.1038/s42003-022-03220-3]	1.3 GB	—
2026-05-23	EMPIAR-12712	PSI-LHCI supercomplex binding with 4 Lhcas from Marchantia polymorpha [multiple data sets in EER and MRC formats]	Tsai P.-C., La Rocca R., MOTOSE H., Shen J.-R., Akita F. [Pubmed: 41644713] [DOI: 10.1038/s42003-026-09631-w] EMD-63404 9lut	4.0 TB	1.94 Å
2026-05-23	EMPIAR-12713	PSI-LHCI dimer from Marchantia polymorpha [multiple data sets in EER and MRC formats]	Tsai P.-C., La Rocca R., MOTOSE H., Shen J.-R., Akita F. [Pubmed: 41644713] [DOI: 10.1038/s42003-026-09631-w] EMD-63405 9luu	8.1 TB	2.52 Å
2026-05-23	EMPIAR-13495	Cryo electron microscopy of human SCFbxo22 in complex with protacs, neosubstrates and endogeneous substrates. [multiple data sets in MRC format]	Amann SJ, Robertson KC, Liu T, James LI, Brown NG, Haselbach D [Pubmed: 42026065] [DOI: 10.1038/s41467-026-72235-9] EMD-57178 EMD-57179 EMD-57180 29hg 29hh 29hi	4.5 TB	4.0 - 5.9 Å
2026-05-22	EMPIAR-12941	Human Argonaute1 F180 Deletion with BS3 [3015 multi-frame micrographs composed of 50 frames each in TIFF format]	Savidge A, Nakanishi K, Adhav V, Shen Z, Fu T [Pubmed: 41237208] [DOI: 10.1073/pnas.2524644122] EMD-72192 9q3f	1.5 TB	3.3 Å
2026-05-21	EMPIAR-13018	Aquifex aeolicus lumazine synthase R29A mutant [5306 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	2.0 TB	—
2026-05-20	EMPIAR-12503	Cryo-EM Structure of the IFN-lambda4/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta [5130 multi-frame micrographs composed of 40 frames each in TIFF format]	Zhang B, Grubbe WS, Mendoza JL, Zhao M [Pubmed: 39827213] [DOI: 10.1038/s41467-025-56119-y] EMD-44790 9bpu	2.9 TB	3.26 Å
2026-05-20	EMPIAR-13542	Cryo-EM structures of alpha5beta1 integrin in complex with NeoNectin [multiple data sets in TIFF and MRC formats]	Werther R, Nguyen A, Alamo KAE, Wang X, Campbell MG [Pubmed: 40489013] [DOI: 10.1002/adma.202500872] EMD-45655 9ckv	382.1 GB	3.19 Å
2026-05-19	EMPIAR-13016	Aquifex aeolicus lumazine synthase in complex with riboflavin synthase [8625 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	3.1 TB	—
2026-05-19	EMPIAR-13017	Aquifex aeolicus lumazine synthase [4998 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	1.9 TB	—
2026-05-19	EMPIAR-13019	Aquifex aeolicus lumazine synthase L121A mutant [4942 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	1.9 TB	—
2026-05-19	EMPIAR-13020	Aquifex aeolicus lumazine synthase I125A mutant [5159 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	2.0 TB	—
2026-05-19	EMPIAR-13252	C. acnes 70S ribosome bound to Doxycycline [3612 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71682 9pj7	1.7 TB	2.4 Å
2026-05-19	EMPIAR-13253	C. acnes 70S ribosome bound to Sarecycline [4014 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71683 9pj8	1.9 TB	2.5 Å
2026-05-19	EMPIAR-13254	C. acnes 70S ribosome bound to Minocycline [5284 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71684 9pj9	2.5 TB	2.5 Å
2026-05-19	EMPIAR-13475	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - paranemic crossover triangle functionalized with a spike protein-binding aptamer (spike-PXT) origami device mixed with purified SARS-CoV-2 spike protein [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-55625 EMD-55622 EMD-55624 EMD-55621 EMD-55623 9t74	4.7 TB	2.78 - 6.92 Å
2026-05-19	EMPIAR-13476	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - 3-helix tile with fluorescent aptamers Broccoli and Pepper (3HT-BP) origami device made with 2'-Fluoro-modified pyrimidines (FY RNA), with dyes HBC620 and DFHBI-1T present [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-55626	3.2 TB	6.41 Å
2026-05-19	EMPIAR-13479	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - 5-helix tile (5HT) origami [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-53795 9r7w	3.0 TB	6.06 Å
2026-05-19	EMPIAR-13480	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - paranemic crossover triangle (PXT) origami [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-53787 9r7q	3.1 TB	4.41 Å
2026-05-18	EMPIAR-13249	E. coli 70S ribosome bound to Doxycycline [4524 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71667 9pih	2.1 TB	2.4 Å
2026-05-18	EMPIAR-13250	E. coli 70S ribosome bound to Sarecycline [3818 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71668 9pii	1.7 TB	2.4 Å
2026-05-18	EMPIAR-13251	E. coli 70S ribosome bound to Minocycline [4976 multi-frame micrographs composed of 35 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71669 9pij	2.2 TB	2.2 Å
2026-05-18	EMPIAR-13538	Raw data used for CS polymerase structure determination (CHSY3-CHPF) [12169 multi-frame micrographs composed of 66 frames each in TIFF format]	Dutta P, Cordeiro RL, Friedel-Arboleas M, Bourgeais M, Vallet SD, Weber M, Molinas M, Shu H, Gronset MNN, Miller RL, Boeri Erba E, Wild R [Pubmed: 41298522] [DOI: 10.1038/s41467-025-66787-5] EMD-52913 9q8z	2.3 TB	3.0 Å

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)