Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。 ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。
Sars-CoV-2の構造が急速に決定され、EMDBやPDBに登録されています。これらは構造ベースの創薬の起点となるでしょう。 Cryo-EMのコミュニティで、これらのデータを検証し再解析を行えるようにするため、緊急のお願いをしたいと思います。 a)SARS-CoV-2に関するデータをEMDB（さらにPDB）に登録済みでしたら、その２D画像データを是非、EMPIARに登録してください。 b)SARS-CoV-2に関するデータの収集を行い、まだEMDBに未登録の方は、是非その画像データをEMPIARに登録してください。 CryoEMのコミュニティが画像処理とモデル構築を支援してくれるでしょう。
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-11-29 |  |
1.42 Angstrom Apoferritin structure determined using G1 Titan krios S-FEG operated at 300kV, zero loss imaging using Gatan BioQuantum energy filter operated at 10eV slit width and imaged using K2 camera. [multiple data sets in MRC format] | Venugopal H EMD-28742 |
9.9 TB | 1.42 Å |
| 2022-11-29 |  |
CryoEM micrographs of a group II intron retroelement (apoRNP) [8005 multi-frame micrographs composed of 40 frames each in TIFF format] | Chung KC, Xu LX, Pyle AMP [Pubmed: 36356138] [DOI: 10.1126/science.abq2844] EMD-26549,7uim |
3.1 TB | 3.1 Å |
| 2022-11-29 |  |
Parallel cryo electron tomography (PACE-tomo) of 70S ribosomes (121 tilt series) [multiple data sets in TIFF and MRC formats] | Eisenstein F, Danev R EMD-33834 |
490.1 GB | 3.1 Å |
| 2022-11-28 |  |
Cryo-EM Structure of Formate Dehydrogenase 1 from Methylorubrum extorquens AM1 [7650 multi-frame micrographs composed of 40 frames each in TIFF format] | Yoshikawa T, Makino F, Miyata T, Suzuki Y, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O [Pubmed: 35535582] [DOI: 10.1039/d2cc01541b] EMD-32151,7vw6 |
1.4 TB | 2.19 Å |
| 2022-11-28 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing WT PopZ [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] EMD-23622 |
7.1 GB | — |
| 2022-11-25 |  |
Cryo-EM dataset of P.berghei kinesin-8B motor domain in AMPPNP state bound to tubulin dimer [1026 micrographs in MRC format] | Liu T, Shilliday F, Cook AD, Moores CA EMD-14460,7z2b |
54.4 GB | 3.3 Å |
| 2022-11-23 |  |
Cryo-electron tomograms of RPE1 cells with comprehensive annotation of actin filaments and microtubules [multiple data sets in TIFF and MRC formats] | Cheng DWC, Goetz SK, Mahamid J [Pubmed: 33077951] [DOI: 10.1038/s41563-020-00825-z] EMD-16136 |
32.9 GB | — |
| 2022-11-21 |  |
Micrographs of Rigid-Rod Aromatics BP-NBD [5610 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] EMD-26962 |
1.2 TB | 2.4 Å |
| 2022-11-21 |  |
Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours [6406 multi-frame micrographs composed of 30 frames each in MRCS format] | Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS [Pubmed: 36114178] [DOI: 10.1038/s41467-022-32951-4] EMD-26665,7upg |
1.7 TB | 3.8 Å |
| 2022-11-21 |  |
Tau Paired Helical Filament from Alzheimer's Disease incubated 1 hr. with EGCG [3890 multi-frame micrographs composed of 48 frames each in TIFF format] | Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS [Pubmed: 36114178] [DOI: 10.1038/s41467-022-32951-4] EMD-26664,7upf |
3.7 TB | 3.3 Å |
| 2022-11-21 |  |
Tau Paired Helical Filament from Alzheimer's Disease not incubated with EGCG [2651 multi-frame micrographs composed of 48 frames each in TIFF format] | Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS [Pubmed: 36114178] [DOI: 10.1038/s41467-022-32951-4] EMD-26663,7upe |
2.5 TB | 3.4 Å |
| 2022-11-18 |  |
Cryo-EM reconstruction of TNKS2 SAM-PARP filament [multiple data sets in MRCS, MRC and TIFF formats] | Mariotti L, Inian O, Desfosses A, Beuron F, Morris E.P, Guettler S EMD-15520,8aly |
11.8 TB | 2.98 Å |
| 2022-11-18 |  |
Single particle cryo-EM of KdpFABC WT (KdpB-Ser162-P) under turnover condition [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] EMD-14912,EMD-14917,EMD-14913,7zre,7zrk,7zrg |
2.9 TB | 3.1 - 3.5 Å |
| 2022-11-18 |  |
A high-throughput electron tomography workflow reveals over-elongated centrioles in relapsed-refractory multiple myeloma [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G | 2.0 TB | — |
| 2022-11-18 |  |
Micrographs of Rigid-Rod Aromatics pBP-NBD [8261 multi-frame micrographs composed of 40 frames each in TIFF format] | Yi M, Wang F, Tan W, Hsieh JT, Egelman EH, Xu B [Pubmed: 35849554] [DOI: 10.1021/jacs.2c05491] EMD-26962 |
1.7 TB | 2.4 Å |
| 2022-11-17 |  |
Defocus and Volta potential phase plate cryo-electron tomography of S. pombe cryo-FIB lamellae with comprehensive annotations of structures and macromolecules [multiple data sets in TIFF and MRC formats] | Goetz SK, Mahamid J EMD-14404,EMD-14405,EMD-14406,EMD-14408,EMD-14409,EMD-14410,EMD-14411,EMD-14412,EMD-14413,EMD-14415,EMD-14417,EMD-14418,EMD-14419,EMD-14420,EMD-14422,EMD-14423,EMD-14424,EMD-14425,EMD-14426 |
305.5 GB | 9.3 - 34.0 Å |
| 2022-11-16 |  |
Single particle cryo-EM of KdpFAB(Ser162-P, D307N)C in apo condition [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] EMD-14914,EMD-14915,EMD-14916,7zrh,7zri,7zrj |
2.5 TB | 3.4 - 3.7 Å |
| 2022-11-16 |  |
Single particle cryo-EM of KdpFABC WT (KdpB-Ser162-P) in presence of orthovanadate [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] EMD-14911,EMD-14347,7zrd |
399.3 GB | 3.3 - 7.4 Å |
| 2022-11-16 |  |
Single particle cryo-EM of KdpFAB(S162A)C under turnover condition [multiple data sets in TIFF format] | Silberberg JM, Stock C, Hielkema L, Corey RA, Rheinberger J, Wunnicke D, Dubach VRA, Stansfeld PJ, Hänelt I, Paulino C [Pubmed: 36255052] [DOI: 10.7554/eLife.80988] EMD-14919,EMD-14918,7zrm,7zrl |
1.8 TB | 3.7 - 4.0 Å |
| 2022-11-16 |  |
Cryo-electron microscopy of Dicer-1 and Its Partner Protein Loqs-PB complex with model pre-miRNA in presence of Mg2+ ions [8128 multi-frame micrographs composed of 38 frames each in TIFF format] | Jouravleva K, Golovenko D, Demo G, Dutcher RC, Hall TMT, Zamore PD, Korostelev AA [Pubmed: 36182693] [DOI: 10.1016/j.molcel.2022.09.002] EMD-27416,EMD-27417,EMD-27420,8dg5,8dg7,8dga |
2.9 TB | 3.26 - 3.73 Å |
| 2022-11-16 |  |
Cryo-electron microscopy of Dicer-1 and Its Partner Protein Loqs-PB complex [2849 multi-frame micrographs composed of 30 frames each in TIFF format] | Jouravleva K, Golovenko D, Demo G, Dutcher RC, Hall TMT, Zamore PD, Korostelev AA [Pubmed: 36182693] [DOI: 10.1016/j.molcel.2022.09.002] EMD-27423,EMD-27427,8dgi,8dgj |
1.1 TB | 3.94 - 4.02 Å |
| 2022-11-15 |  |
Amyloid fibril from the antimicrobial peptide uperin 3.5 [multiple data sets in TIFF, MRC and MRCS formats] | Bücker R, Seuring C, Cazey C, Veith K, Garcia-Alai M, Grünewald K, Landau M [Pubmed: 35896552] [DOI: 10.1038/s41467-022-32039-z] EMD-14167,7qv5 |
7.4 TB | 3.0 Å |
| 2022-11-15 |  |
Cryo-EM movies of the human α1β3γ2 GABAA receptor in a lipid bilayer bound to diazepam and GABA [1472 multi-frame micrographs composed of 40 frames each in TIFF format] | Masiulis S, Desai R, Uchanski T, Serna Martin I, Laverty D, Karia D, Malinauskas T, Zivanov J, Pardon E, Kotecha A, Steyaert J, Miller KW, Aricescu AR [Pubmed: 30602790] [DOI: 10.1038/s41586-018-0832-5] EMD-0283,6hup |
1.8 TB | 3.58 Å |
| 2022-11-15 |  |
Cryo-EM movies of the human α1β3γ2 GABAA receptor in a lipid bilayer bound to bicuculline [988 multi-frame micrographs composed of 75 frames each in TIFF format] | Masiulis S, Desai R, Uchanski T, Serna Martin I, Laverty D, Karia D, Malinauskas T, Zivanov J, Pardon E, Kotecha A, Steyaert J, Miller KW, Aricescu AR [Pubmed: 30602790] [DOI: 10.1038/s41586-018-0832-5] EMD-0280,6huk |
1.2 TB | 3.69 Å |
| 2022-11-15 |  |
Reconstituted USP1, UAF1, FANCI, mono-ubiquitinated FANCD2 and the inhibitor ML323 [10998 multi-frame micrographs composed of 40 frames each in TIFF format] | Rennie ML, Walden H [Pubmed: 36170365] [DOI: 10.1126/sciadv.abq6353] EMD-15284,EMD-14722,EMD-14720,EMD-14721,EMD-14719,8a9j,7zh3,7zh4 |
2.3 TB | 2.49 - 2.85 Å |
