EMPIAR-PDBj - Electron Microscopy Public Image Archive

ストレージ復旧に関する情報 (Updated: 2026年6月11日11:35)

現在、ストレージの障害により、一部データセットがアクセスできないか不完全な状態（Marked: Incomplete dataset）になっています。
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Release date	Imageset	Title	Authors and references	Size	Resolution
2026-05-19	EMPIAR-13017	Aquifex aeolicus lumazine synthase [4998 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	1.9 TB	—
2026-05-19	EMPIAR-13019	Aquifex aeolicus lumazine synthase L121A mutant [4942 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	1.9 TB	—
2026-05-19	EMPIAR-13020	Aquifex aeolicus lumazine synthase I125A mutant [5159 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	2.0 TB	—
2026-05-19	EMPIAR-13252	C. acnes 70S ribosome bound to Doxycycline [3612 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71682 9pj7	1.7 TB	2.4 Å
2026-05-19	EMPIAR-13253	C. acnes 70S ribosome bound to Sarecycline [4014 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71683 9pj8	1.9 TB	2.5 Å
2026-05-19	EMPIAR-13254	C. acnes 70S ribosome bound to Minocycline [5284 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71684 9pj9	2.5 TB	2.5 Å
2026-05-19	EMPIAR-13475	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - paranemic crossover triangle functionalized with a spike protein-binding aptamer (spike-PXT) origami device mixed with purified SARS-CoV-2 spike protein [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-55625 EMD-55622 EMD-55624 EMD-55621 EMD-55623 9t74	4.7 TB	2.78 - 6.92 Å
2026-05-19	EMPIAR-13476	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - 3-helix tile with fluorescent aptamers Broccoli and Pepper (3HT-BP) origami device made with 2'-Fluoro-modified pyrimidines (FY RNA), with dyes HBC620 and DFHBI-1T present [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-55626	3.2 TB	6.41 Å
2026-05-19	EMPIAR-13479	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - 5-helix tile (5HT) origami [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-53795 9r7w	3.0 TB	6.06 Å
2026-05-19	EMPIAR-13480	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - paranemic crossover triangle (PXT) origami [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-53787 9r7q	3.1 TB	4.41 Å
2026-05-18	EMPIAR-13249	E. coli 70S ribosome bound to Doxycycline [4524 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71667 9pih	2.1 TB	2.4 Å
2026-05-18	EMPIAR-13250	E. coli 70S ribosome bound to Sarecycline [3818 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71668 9pii	1.7 TB	2.4 Å
2026-05-18	EMPIAR-13251	E. coli 70S ribosome bound to Minocycline [4976 multi-frame micrographs composed of 35 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71669 9pij	2.2 TB	2.2 Å
2026-05-18	EMPIAR-13538	Raw data used for CS polymerase structure determination (CHSY3-CHPF) [12169 multi-frame micrographs composed of 66 frames each in TIFF format]	Dutta P, Cordeiro RL, Friedel-Arboleas M, Bourgeais M, Vallet SD, Weber M, Molinas M, Shu H, Gronset MNN, Miller RL, Boeri Erba E, Wild R [Pubmed: 41298522] [DOI: 10.1038/s41467-025-66787-5] EMD-52913 9q8z	2.3 TB	3.0 Å
2026-05-15	EMPIAR-12839	CryoEM structure of phospholipid-independent cyclised RP4 pilus [3405 multi-frame micrographs composed of 43 frames each in TIFF format]	Ishimoto N, Beis K	543.1 GB	—
2026-05-15	EMPIAR-13097	High-resolution cryo-EM structure of Maltose Binding Protein [3328 multi-frame micrographs composed of 60 frames each in EER format]	Park K, Yoo Y, Jeon H, Choi K, Kwon E, Lim H, Kim DY, No KT [Pubmed: 41980966] [DOI: 10.1038/s41467-026-71934-7] EMD-66973 9xko	2.2 TB	2.35 Å
2026-05-13	EMPIAR-13326	Cryo-electron tomography of the actin cortex of NIH 3T3 fibroblasts upon regulation of membrane-to-cortex attachment [multiple data sets in TIFF and MRC formats]	Gérard SF, Cheng DCW, Toro-Nahuelpan M, Mahamid J, Diz-Munoz A [DOI: 10.1038/s41467-026-72845-3]	804.3 GB	—
2026-05-13	EMPIAR-13466	CryoEM reconstruction of coxsackievirus B1 virus-like particle with VP4 deletion [8020 multi-frame micrographs composed of 40 frames each in EER format]	Levanova AA, Ahmad KLL, Gurianov S, Butcher SJ [Pubmed: 41888844] [DOI: 10.1186/s12929-026-01229-y] EMD-56033 9tkm	4.9 TB	2.7 Å
2026-05-13	EMPIAR-13474	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - 'Traptamer' origami device with dye DFHBI-1T present [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-55635	1.5 TB	9.9 Å
2026-05-13	EMPIAR-13477	Cryo-EM raw movies of 2'-F-pyrimidine RNA origami - 6-helix bundle (6HB) origami monomer [3360 multi-frame micrographs composed of 56 frames each in TIFF format]	Kristoffersen EL, Hansen K, Zwergius NH, Andersen ES EMD-53803 9r82	628.8 GB	9.33 Å
2026-05-13	EMPIAR-13536	Single particle raw data of falcilysin in the absence of MK-4815 [18180 multi-frame micrographs composed of 765 frames each in EER format]	LIN J.Q., Yan X, Lescar J [Pubmed: 39217277] [DOI: 10.1038/s42003-024-06774-6] EMD-37940 EMD-37941 8wyx 8wyy	5.1 TB	3.1 - 3.5 Å
2026-05-13	EMPIAR-13546	Single particle raw data of falcilysin in the presence of MK-4815 [6764 multi-frame micrographs composed of 783 frames each in EER format]	LIN J.Q., Yan X, Lescar J [Pubmed: 39217277] [DOI: 10.1038/s42003-024-06774-6] EMD-37938 EMD-37939 8wyt 8wyu	1.9 TB	2.7 - 3.2 Å
2026-05-05	EMPIAR-13098	High-resolution cryo-EM structure of human Polo-like kinase 1 in complex with onvansertib [13011 multi-frame micrographs composed of 36 frames each in TIFF format]	Park K, Yoo Y, Jeon H, Choi K, Kwon E, Lim H, Kim DY, No KT [Pubmed: 41980966] [DOI: 10.1038/s41467-026-71934-7] EMD-68616 22rd	1.8 TB	3.38 Å
2026-05-05	EMPIAR-13508	Mouse heavy-chain apoferritin on continuous carbon from 300 kV Titan Krios [3417 multi-frame micrographs composed of 414 frames each in EER format]	Fromm SA, Mattei S EMD-57470	678.7 GB	1.09 Å
2026-05-05	EMPIAR-13509	Mouse heavy-chain apoferritin on continuous carbon from 200 kV Glacios [3033 multi-frame micrographs composed of 648 frames each in EER format]	Fromm SA, Mattei S EMD-57471	866.3 GB	1.62 Å

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）