EMPIAR-PDBj - Electron Microscopy Public Image Archive

ストレージ復旧に関する情報 (Updated: 2026年6月5日19:05)

現在、ストレージの障害により、一部データセットがアクセスできないか不完全な状態（Marked: Incomplete dataset）になっています。
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大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。

Release date	Imageset	Title	Authors and references	Size	Resolution
2026-05-31	EMPIAR-13345	Single-particle cryo-EM structures of E. coli 70S ribosomes, WT and mutants with trapped RNA conformational ground and excited states [multiple data sets in TIFF and MRC formats]	Steinmetzger C, Riad M, Petzold K [DOI: 10.64898/2026.05.08.718354] EMD-56070 EMD-56091 EMD-56128 EMD-56827 EMD-56828 EMD-56829 EMD-56830 EMD-56831 EMD-56832 EMD-56833 EMD-56834 EMD-56835 EMD-56836 EMD-56837 EMD-56839 EMD-56840 EMD-56841 EMD-56842 EMD-56843 EMD-56844 EMD-56845 EMD-56846 EMD-56847 EMD-56848 EMD-56849 EMD-56850 EMD-56851 EMD-56852 EMD-56853 EMD-56854 9tmi 9tnl 9tqa 28uh 28ui 28uj 28uk 28ul 28um 28un	16.6 TB	1.98 - 3.53 Å
2026-05-31	EMPIAR-13510	Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides [multiple data sets in MRC and MRCS formats]	Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I [Pubmed: 41162373] [DOI: 10.1038/s41467-025-65298-7] EMD-55123 EMD-55124 EMD-54254 EMD-54253 9rtv 9rtu	1.5 TB	2.53 - 4.33 Å
2026-05-31	EMPIAR-13573	Raw data for single-particle cryo-EM analysis of P. aeruginosa PA3214 in complex with the C-terminal peptide of PA3213 [multiple data sets in TIFF format]	Giacometti SI, Coudray N, Bhabha G, Ekiert DC [DOI: 10.64898/2026.05.09.724024] EMD-77072 EMD-77073 EMD-77074 13hr 13hs	2.8 TB	2.7 - 12.0 Å
2026-05-29	EMPIAR-13386	Membrane insertion of mitochondrial-encoded proteins regulates ribosome decoding speed [multiple data sets in MRC and MRCS formats]	Schöndorf T, Petrychenko V, Kotan I, Dahal D, Napieraj N, Cruz-Zaragoza LD, Wang C, Urbach O, Gall T, Dennerlein S, Kramer G, Fischer N, Rehling P [Pubmed: 42098403] [DOI: 10.1038/s41594-026-01803-w]	3.5 TB	—
2026-05-28	EMPIAR-13587	Cryo-EM movies of MucR oligomers [4020 multi-frame micrographs composed of 60 frames each in MRC format]	Chaves-Sanjuan A, Nardini M [Pubmed: 39588759] [DOI: 10.1093/nar/gkae1104] EMD-19826	2.3 TB	3.8 Å
2026-05-27	EMPIAR-12886	Cryo-EM structure of H3.V H4.V trypanosome nucleosome [8052 multi-frame micrographs composed of 50 frames each in TIFF format]	Deák G, Wilson MD [Pubmed: 41709455] [DOI: 10.1016/j.str.2026.01.008] EMD-53505 9r1d	4.1 TB	3.21 Å
2026-05-27	EMPIAR-13367	Cryo-EM reconstruction of undecorated GDP microtubule (13-3) [5004 micrographs in MRC format]	Munoz-Hernandez, Hugo HMH, Filipcik, Pavel PF, Steinmetz, Michel O. MOS, Wieczorek, Michal MW [Pubmed: 42044018] [DOI: 10.1107/S2059798326003062] EMD-55440	530.9 GB	3.62 Å
2026-05-27	EMPIAR-13372	Cryo-EM reconstruction of KIF5A motor domain-decorated, GMPCPP microtubule [1676 micrographs in MRC format]	Munoz-Hernandez, Hugo HMH, Filipcik, Pavel PF, Wieczorek, Michal M [Pubmed: 42044018] [DOI: 10.1107/S2059798326003062] EMD-55444	88.9 GB	4.16 Å
2026-05-26	EMPIAR-13572	Raw data for single-particle cryo-EM analysis of soluble P. aeruginosa PA3214 [6463 multi-frame micrographs composed of 50 frames each in TIFF format]	Giacometti SI, Coudray N, Redler RL, Bhabha G, Ekiert DC [DOI: 10.64898/2026.05.09.724024] EMD-77071 13hq	2.4 TB	2.67 Å
2026-05-24	EMPIAR-10958	Two-dimensional analysis of human CRP [stack of 6561 particles in MRC format]	Cheng B, Lv JM, Liang YL, Zhu L, Huang XP, Li HY, Potempa LA, Ji SR, Wu Y [Pubmed: 35338247] [DOI: 10.1038/s42003-022-03220-3]	2.4 GB	—
2026-05-24	EMPIAR-10959	Two-dimensional analysis of rat CRP [21 micrographs in MRC format]	Cheng B, Lv JM, Liang YL, Zhu L, Huang XP, Li HY, Potempa LA, Ji SR, Wu Y [Pubmed: 35338247] [DOI: 10.1038/s42003-022-03220-3]	1.3 GB	—
2026-05-24	EMPIAR-10960	Two-dimensional analysis of mouse CRP [22 micrographs in MRC format]	Cheng B, Lv JM, Liang YL, Zhu L, Huang XP, Li HY, Potempa LA, Ji SR, Wu Y [Pubmed: 35338247] [DOI: 10.1038/s42003-022-03220-3]	1.3 GB	—
2026-05-23	EMPIAR-12712	PSI-LHCI supercomplex binding with 4 Lhcas from Marchantia polymorpha [multiple data sets in EER and MRC formats]	Tsai P.-C., La Rocca R., MOTOSE H., Shen J.-R., Akita F. [Pubmed: 41644713] [DOI: 10.1038/s42003-026-09631-w] EMD-63404 9lut	4.0 TB	1.94 Å
2026-05-23	EMPIAR-12713	PSI-LHCI dimer from Marchantia polymorpha [multiple data sets in EER and MRC formats]	Tsai P.-C., La Rocca R., MOTOSE H., Shen J.-R., Akita F. [Pubmed: 41644713] [DOI: 10.1038/s42003-026-09631-w] EMD-63405 9luu	8.1 TB	2.52 Å
2026-05-23	EMPIAR-13495	Cryo electron microscopy of human SCFbxo22 in complex with protacs, neosubstrates and endogeneous substrates. [multiple data sets in MRC format]	Amann SJ, Robertson KC, Liu T, James LI, Brown NG, Haselbach D [Pubmed: 42026065] [DOI: 10.1038/s41467-026-72235-9] EMD-57178 EMD-57179 EMD-57180 29hg 29hh 29hi	4.5 TB	4.0 - 5.9 Å
2026-05-22	EMPIAR-12941	Human Argonaute1 F180 Deletion with BS3 [3015 multi-frame micrographs composed of 50 frames each in TIFF format]	Savidge A, Nakanishi K, Adhav V, Shen Z, Fu T [Pubmed: 41237208] [DOI: 10.1073/pnas.2524644122] EMD-72192 9q3f	1.5 TB	3.3 Å
2026-05-21	EMPIAR-13018	Aquifex aeolicus lumazine synthase R29A mutant [5306 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	2.0 TB	—
2026-05-20	EMPIAR-12503	Cryo-EM Structure of the IFN-lambda4/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta [5130 multi-frame micrographs composed of 40 frames each in TIFF format]	Zhang B, Grubbe WS, Mendoza JL, Zhao M [Pubmed: 39827213] [DOI: 10.1038/s41467-025-56119-y] EMD-44790 9bpu	2.9 TB	3.26 Å
2026-05-20	EMPIAR-13542	Cryo-EM structures of alpha5beta1 integrin in complex with NeoNectin [multiple data sets in TIFF and MRC formats]	Werther R, Nguyen A, Alamo KAE, Wang X, Campbell MG [Pubmed: 40489013] [DOI: 10.1002/adma.202500872] EMD-45655 9ckv	382.1 GB	3.19 Å
2026-05-19	EMPIAR-13016	Aquifex aeolicus lumazine synthase in complex with riboflavin synthase [8625 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	3.1 TB	—
2026-05-19	EMPIAR-13017	Aquifex aeolicus lumazine synthase [4998 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	1.9 TB	—
2026-05-19	EMPIAR-13019	Aquifex aeolicus lumazine synthase L121A mutant [4942 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	1.9 TB	—
2026-05-19	EMPIAR-13020	Aquifex aeolicus lumazine synthase I125A mutant [5159 multi-frame micrographs composed of 40 frames each in TIFF format]	Koziej L, Azuma Y [DOI: 10.1038/s41467-026-73260-4]	2.0 TB	—
2026-05-19	EMPIAR-13252	C. acnes 70S ribosome bound to Doxycycline [3612 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71682 9pj7	1.7 TB	2.4 Å
2026-05-19	EMPIAR-13253	C. acnes 70S ribosome bound to Sarecycline [4014 multi-frame micrographs composed of 40 frames each in TIFF format]	Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG [DOI: 10.1038/s41467-026-72788-9] EMD-71683 9pj8	1.9 TB	2.5 Å

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Citations

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

See all citations

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