EMPIAR-12282 - Mouse TMEM63b in DDM-CHS micelle with YN9303-24 Fab [10051 multi-frame micrographs composed of 48 frames each in TIFF format]

EMPIAR-12282

Mouse TMEM63b in DDM-CHS micelle with YN9303-24 Fab [10051 multi-frame micrographs composed of 48 frames each in TIFF format]

Publication:

Mouse TMEM63b in DDM-CHS micelle with YN9303-24 Fab

Miyata Y, Takahashi K, Lee Y, Sultan C.S., Kuribayashi R, Takahashi M, Hata K, Bamba T, Izumi Y, Liu K, Uemura T, Nomura N, Iwata S, Nagata S, Segawa K, Nishizawa T

(---)

Related EMDB entry:

EMD-37502

Deposited:

2024-09-03

Released:

2025-06-19

Last modified:

2025-06-19

Imageset size:

2.21 TB

Imageset DOI:

10.6019/EMPIAR-12282

Experimental metadata:

Download xml json

Deposited via PDBj

Contains:

micrographs - multiframe

Image Sets

1. Imageset_1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

10051

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

- 105k (0.83 A/px)
- K3 CDS Counted SuperResolution - bin 2
- 7.8 e/px/sec x 4.3 sec (49 e/A^2 calculated)
- 48 frames
- defocus -1.6, -1.4, -1.2, -1.0, -0.8 um
- single shot/hole (beam diameter = 1.06 um)
- Please use gain.(mrc|tiff) as a gain reference without flipping or rotation.

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

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