Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to equipment maintenance, service will be unavailable during the following periods.
All services from EMPIAR-PDBj, including web pages, cannot be provided. Please use EMPIAR-EBI during this period.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
We have seen a large number of SARS-CoV-2 structures being determined rapidly and deposited into the PDB and EMDB, which provides a starting point for structure-guided drug discovery. In order to validate and reanalyze the data by the cryo-EM community, we would like to make the following urgent appeal. a) If you have deposited any cryo-EM structures related to SARS-CoV-2 to the EMDB (and possibly the PDB), please deposit the raw data to EMPIAR. b) If you have collected cryo-EM data related to SARS-CoV-2 but have not yet deposited a structure, please consider depositing the raw data to EMPIAR, so that the cryo-EM community could contribute to processing and model-building.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-01-30 |  |
ChRmine in MSP1E3D1 lipid nanodisc [10903 multi-frame micrographs composed of 50 frames each in TIFF format] | Tucker K, Sridharan S, Adesnik H, Brohawn SG [Pubmed: 35977941] [DOI: 10.1038/s41467-022-32441-7] EMD-25091,EMD-25079,7sfk,7sfj |
7.0 TB | 2.74 Å |
| 2023-01-30 |  |
Translating 70S ribosome [19449 multi-frame micrographs composed of 1295 frames each in EER format] | Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S [Pubmed: 36841832] [DOI: 10.1038/s41467-023-36742-3] EMD-15793,8b0x |
7.1 TB | 1.55 Å |
| 2023-01-30 |  |
Cryogenic electron tomographs of Coxsackievirus A9 [2421 multi-frame micrographs composed of 30 frames each in MRC format] | Domanska A, Plavec Z, Ruokolainen V, Löflund B, Marjomäki V, Butcher SJ [Pubmed: 36448797] [DOI: 10.1128/jvi.01367-22] EMD-15634,8at5 |
2.1 TB | 2.9 Å |
| 2023-01-30 |  |
3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format] | Dyhr MCA, Sadeghi M, Moynova R, Knappe C, Kepsutlu Çakmak B, Werner S, Schneider G, McNally J, Noe F, Ewers H | 23.5 GB | — |
| 2023-01-26 |  |
Apo-ChRmine in MSP1E3D1 lipid nanodisc [5339 multi-frame micrographs composed of 50 frames each in TIFF format] | Tucker KCT, Brohawn SGB [Pubmed: 35977941] [DOI: 10.1038/s41467-022-32441-7] EMD-25135,7shs |
3.5 TB | 4.1 Å |
| 2023-01-25 |  |
Ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA [multiple data sets in TIFF format] | Lemonidis K, Rennie ML, Arkinson C, Chaugule VK, Clarke M, Streetley J, Walden H [Pubmed: 36385258] [DOI: 10.15252/embj.2022111898] EMD-14694,7zf1 |
2.9 TB | 4.14 Å |
| 2023-01-20 |  |
Movies for human CST-Pola-primase bound to 3xTEL DNA template [6252 multi-frame micrographs composed of 40 frames each in TIFF format] | He Q, Lin X, Chavez BL, Agrawal S, Lusk BL, Lim C [Pubmed: 35830881] [DOI: 10.1038/s41586-022-05040-1] EMD-27097,EMD-27099 |
1.5 TB | 3.61 - 3.62 Å |
| 2023-01-20 |  |
Movies for human CST-Pola-primase bound to 6xTEL DNA template [8658 multi-frame micrographs composed of 40 frames each in TIFF format] | He Q, Lin X, Chavez BL, Agrawal S, Lusk BL, Lim C [Pubmed: 35830881] [DOI: 10.1038/s41586-022-05040-1] EMD-27109 |
1.9 TB | 3.69 Å |
| 2023-01-20 |  |
Movies for human CST-Pola-primase bound to 4xTEL-FB DNA template (PIC and advanced PIC) [7799 multi-frame micrographs composed of 40 frames each in TIFF format] | He Q, Lin X, Chavez BL, Agrawal S, Lusk BL, Lim C [Pubmed: 35830881] [DOI: 10.1038/s41586-022-05040-1] EMD-27104,EMD-27107,8d0b,8d0k |
1.6 TB | 3.43 - 4.27 Å |
| 2023-01-20 |  |
Cryogenic electron tomographs of Coxsackievirus A9 treated with endosomal ionic condition buffer [1964 multi-frame micrographs composed of 30 frames each in MRC format] | Domanska A, Plavec Z, Ruokolainen V, Löflund B, Marjomäki V, Butcher SJ [Pubmed: 36448797] [DOI: 10.1128/jvi.01367-22] EMD-15706,8axx |
1.8 TB | 3.3 Å |
| 2023-01-19 |  |
Cryo Electron Microscopy of CHMP1B/IST1 Membrane-Bound Filaments with Brominated Lipid Probes [multiple data sets in MRC format] | Moss FR, Lincoff J, Tucker M, Mohammed A, Grabe M, Frost A [Pubmed: 36624348] [DOI: 10.1038/s41594-022-00898-1] EMD-27991,EMD-28694,EMD-28695,EMD-28696,EMD-28697,EMD-28698,EMD-28699,EMD-28700,EMD-28701,EMD-28702,EMD-28703,EMD-28704,EMD-28705,EMD-28706,EMD-28707,EMD-28708,EMD-28709,EMD-28710,EMD-28711,EMD-28712,EMD-28713,EMD-28714,EMD-28715,EMD-28716,EMD-28717,EMD-28718,EMD-28719,EMD-28722 |
3.7 TB | 2.8 - 9.5 Å |
| 2023-01-19 |  |
Cryogenic electron tomographs of Coxsackievirus A9 treated with fatty-acid-free BSA [2472 multi-frame micrographs composed of 30 frames each in MRC format] | Domanska A, Plavec Z, Ruokolainen V, Löflund B, Marjomäki V, Butcher SJ [Pubmed: 36448797] [DOI: 10.1128/jvi.01367-22] EMD-15692,8aw6 |
2.3 TB | 3.5 Å |
| 2023-01-19 |  |
Human heparan sulfate polymerase complex EXT1-EXT2 [7046 micrographs in MRC format] | Leisico F, Omeiri J, Hons M, Schoehn G, Lortat-Jacob H, Wild R [Pubmed: 36402845] [DOI: 10.1038/s41467-022-34882-6] EMD-14582,7zay |
618.7 GB | 2.8 Å |
| 2023-01-19 |  |
Cryo-EM structure of the RhlR-PqsE complex from Pseudomonas aeruginosa [multiple data sets in TIFF and MRCS formats] | Feathers JR, Fromme JC, Paczkowski JE [Pubmed: 36379213] [DOI: 10.1016/j.str.2022.10.008] EMD-27645,EMD-27646,8dq0,8dq1 |
2.0 TB | 3.74 - 4.1 Å |
| 2023-01-18 |  |
Cryo iDPC-STEM single particle analysis of keyhole limpet hemocyanin [multiple data sets in TIFF format] | Mann DM, Lazic I, Wirix M, de Haas F [Pubmed: 36064775] [DOI: 10.1038/s41592-022-01586-0] EMD-14407 |
42.9 GB | 6.51 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: RiboProt singleshot [39 tilt series in MRC format] | Khavnekar S, Erdmann PSE, Plitzko J [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] EMD-16180,EMD-16162 |
122.2 GB | 4.7 - 7.8 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: RiboProt multishot (2 shots) [26 tilt series in MRC format] | Khavnekar S, Erdmann PSE, Plitzko J [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] EMD-16165,EMD-16181 |
78.0 GB | 4.7 - 8.3 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: E.coli cryo-FIB lamellae multishot [30 tilt series in MRC format] | Khavnekar S, Erdmann PS, Plitzko JM [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] EMD-16139 |
90.7 GB | 8.8 Å |
| 2023-01-18 |  |
Organizing Structural Principles of the Interleukin-17 Ligand-Receptor Axis [multiple data sets in TIFF format] | Caveney NA, Wilson SC, Garcia KC [Pubmed: 35863378] [DOI: 10.1038/s41586-022-05116-y] EMD-26833,EMD-26834,EMD-26835,EMD-26836,EMD-26837,7uwj,7uwk,7uwl,7uwm,7uwn |
17.7 TB | 2.5 - 4.4 Å |
| 2023-01-18 |  |
Tilt series of cell-cell contact of two PTK-1 cells [35 tilt series in MRC format] | Lemos M, Bezault A, Sauvanet C, Hanein D, Volkmann N [Pubmed: 36539423] [DOI: 10.1038/s41467-022-35409-9] EMD-15394 |
1.1 GB | — |
| 2023-01-18 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 30 eps [1478 multi-frame micrographs composed of 40 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] |
348.5 GB | — |
| 2023-01-17 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 60 eps [869 multi-frame micrographs composed of 20 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] EMD-28269,8en7 |
154.5 GB | 1.68 Å |
| 2023-01-16 |  |
Structure of the active Gi-coupled human lysophosphatidic acid receptor 1 complexed with a potent agonist [6228 multi-frame micrographs composed of 48 frames each in TIFF format] | Akasaka H, Tanaka T, Sano FK, Matsuzaki Y, Shihoya W, Nureki O [Pubmed: 36109516] [DOI: 10.1038/s41467-022-33121-2] EMD-34097,EMD-34098,EMD-34099,EMD-34100,EMD-34101,EMD-34102,7yu3,7yu4,7yu5,7yu6,7yu7,7yu8 |
1.4 TB | 3.5 - 5.6 Å |
| 2023-01-16 |  |
Cryo-EM structures of the β3 adrenergic receptor bound to solabegron and isoproterenol [multiple data sets in TIFF format] | Nagiri C, Kobayashi K, Tomita A, Kato M, Yamashita K, Nishizawa T, Inoue A, Shihoya W, Nureki O [Pubmed: 35489202] [DOI: 10.1016/j.bbrc.2022.04.065] EMD-33227,EMD-33228,7xjh,7xji |
2.5 TB | 3.3 - 3.9 Å |
| 2023-01-16 |  |
Dog beta3 adrenergic receptor bound to mirabegron in complex with a miniGs heterotrimer [2864 multi-frame micrographs composed of 48 frames each in TIFF format] | Nagiri C, Kobayashi K, Tomita A, Kato M, Yamashita K, Nishizawa T, Inoue A, Shihoya W, Nureki O [Pubmed: 34314699] [DOI: 10.1016/j.molcel.2021.06.024] EMD-30678,7dh5 |
671.1 GB | 3.16 Å |
