The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-12-02 | Single Particle Cryo-EM of the PARIS Immune complex following release of AriB [9399 multi-frame micrographs composed of 50 frames each in TIFF format] | Burman NB, Henriques W, Wilkinson R, Graham A, Wiedenheft B [DOI: 10.1038/s41586-024-07874-3] |
7.0 TB | 4.5 Å | |
2024-12-02 | Cryo-EM of hMRS2-BRIL with Ca2+ [10816 multi-frame micrographs in tif format] [10816 multi-frame micrographs composed of 40 frames each in MRC format] | He Z, Mount JW, Zhang J, Yuan P [DOI: 10.1038/s41594-024-01420-5] |
2.6 TB | 3.11 Å | |
2024-12-02 | FIB-SEM datasets of hippocampal neurons from WT and FAM92A1 knockout mice [multiple data sets in TIFF format] | Vihinen H, Jokitalo E, Wang L [Pubmed: 39043703] [DOI: 10.1038/s41467-024-50565-w] |
73.6 GB | — | |
2024-12-02 | Single particle dataset of respiratory complex I from Paracoccus dentrificans in MSP2N2 nanodiscs [16814 multi-frame micrographs composed of 40 frames each in TIFF format] | Ivanov BS, Bridges HR [Pubmed: 39472559] [DOI: 10.1038/s41467-024-53679-3] |
6.7 TB | 2.3 - 2.5 Å | |
2024-12-02 | Interleaved scanning electron microscopy: exploring native samples at the mesoscale.Adult mouse brain [multiple data sets in TIFF and MRC formats] | Dumoux M | 344.8 GB | — | |
2024-12-01 | cryo-EM structure of a non-neutralizing antibody V5-4 in complex with SARS-CoV-2 spike [5895 micrographs in MRC format] | Bajic G [Pubmed: 39504245] [DOI: 10.1016/j.celrep.2024.114922] |
517.5 GB | 3.6 Å | |
2024-11-30 | Cryo-electron microscopy of mycobacteriophage BaDAS-1 particles [5571 multi-frame micrographs composed of 30 frames each in TIFF format] | Freeman KF, Podgorski J, White SJ, Hatfull GF | 1.4 TB | 2.67 - 4.0 Å | |
2024-11-27 | CTFFIND5 provides improved insight into quality, tilt and tickness of TEM samples [multiple data sets in MRC format] | Elferich JE, Kong LK, Zottig XZ, Grigorieff NG [DOI: 10.7554/eLife.97227.1] |
9.1 GB | — | |
2024-11-27 | Cryo-EM movies of axle-less Bacillus sp. PS3 F1 ATPase mutant [2992 multi-frame micrographs composed of 75 frames each in TIFF format] | Furlong EJ, Reininger-Chatzigiannakis I-BP, Zeng YC, Brown SHJ, Sobti M, Stewart AG [Pubmed: 39428050] [DOI: 10.1016/j.bbabio.2024.149521] |
887.9 GB | 3.0 Å | |
2024-11-27 | In situ cryo-electron tomography of the T. pseudonana diatom PyShell4 Ko and WT [multiple data sets in MRC, EER and TIFF formats] | Demulder M, Engel BD [Pubmed: 39368476] [DOI: 10.1016/j.cell.2024.09.025] |
146.5 GB | — | |
2024-11-27 | Cryo electron tomography of Rhinovirus 2-infected cos-7 cells, vitrified 60 min post-infection [39 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 2.5 GB | 4.7 - 7.1 Å | |
2024-11-27 | Structure of DNMT3A1-DNMt3L complex on a nucleosome [multiple data sets in TIFF format] | Wapenaar H [DOI: 10.1101/2023.10.29.564595] |
2.9 TB | 3.1 Å | |
2024-11-25 | Cryo-EM movies of the Gallus gallus FANCD2-FANCI in complex with ss-dsDNA [22690 multi-frame micrographs composed of 40 frames each in TIFF format] | Alcon P, Kaczmarczyk AP, Ray KK, Liolios T, Guilbaud G, Sijacki T, Shen Y, McLaughlin SH, Sale JE, Knipscheer P, Rueda DS, Passmore LA [Pubmed: 39085614] [DOI: 10.1038/s41586-024-07770-w] |
3.8 TB | 3.59 Å | |
2024-11-25 | Cryo-EM movies of the Gallus gallus FANCD2-FANCI in complex with dsDNA [19032 multi-frame micrographs composed of 40 frames each in TIFF format] | Alcon P, Kaczmarczyk AP, Ray KK, Liolios T, Guilbaud G, Sijacki T, Shen Y, McLaughlin SH, Sale JE, Knipscheer P, Rueda DS, Passmore LA [Pubmed: 39085614] [DOI: 10.1038/s41586-024-07770-w] |
3.2 TB | 3.68 Å | |
2024-11-21 | Human platelets in presence of SARS-CoV-2 spike protein [6 reconstructed volumes in MRC format] | Basnet N, Bodakuntla S, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N [Pubmed: 36739444] [DOI: 10.1038/s41467-023-36279-5] |
15.3 GB | — | |
2024-11-21 | Interleaved scanning electron microscopy: exploring native samples at the mesoscale. E.gracilis [multiple data sets in TIFF and MRC formats] | Dumoux M | 249.7 GB | — | |
2024-11-21 | Cryo electron tomography of non-infected cos-7 cells [41 reconstructed volumes in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 33.2 GB | 4.7 - 7.1 Å | |
2024-11-21 | Cryo electron tomography of Echovirus 18-infected cos-7 cells [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T [Pubmed: 30850609] [DOI: 10.1038/s41467-019-09132-x] |
13.1 GB | 3.16 Å | |
2024-11-21 | Cryo electron tomography of Enterovirus 71-infected cells [49 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 21.1 GB | 4.7 - 7.1 Å | |
2024-11-21 | Cryo electron tomography of non-infected cos-7 cells with osmicated very low density lipoprotein [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 7.6 GB | 4.7 - 7.1 Å | |
2024-11-21 | Cryo electron tomography of Echovirus 18-infected cos-7 cells [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T [Pubmed: 30850609] [DOI: 10.1038/s41467-019-09132-x] |
2.6 GB | 3.16 Å | |
2024-11-21 | Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 32.8 GB | 4.7 - 7.1 Å | |
2024-11-21 | Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor bafilomycin A [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 6.3 GB | 4.7 - 7.1 Å | |
2024-11-21 | Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor wiskostatin [2 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.9 GB | 4.7 - 7.1 Å | |
2024-11-21 | Cryo electron tomography of Echovirus 30-infected cos-7 cells [6 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T [Pubmed: 30850609] [DOI: 10.1038/s41467-019-09132-x] |
44.7 GB | 19.4 Å |