Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-06-05 | Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts [228 multi-frame micrographs composed of 5 frames each in MRC format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
96.1 GB | — | |
2024-06-05 | Native structure of a human GBP defense complex for cell-autonomous immunity to infection [280 tilt series in TIFF format] | MacMicking JDM, Zhu SZ [Pubmed: 38422126] [DOI: 10.1126/science.abm9903] |
9.7 GB | 17.0 Å | |
2024-06-04 | Taf15 amyloid filaments - Individual 2 [2314 multi-frame micrographs composed of 40 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SY, Garringer HJ, Newell KL, Vidal R, Apostolova LG, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
440.4 GB | 2.14 Å | |
2024-06-04 | Taf15, TMEM106B and Aß42 amyloid filaments - Individual 4, frontal cortex [5604 multi-frame micrographs composed of 41 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SY, Garringer HJ, Newell KL, Vidal R, Apostolova LG, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
930.4 GB | 2.67 - 3.56 Å | |
2024-06-04 | Taf15, TMEM106B and Aß42 amyloid filaments - Individual 4, brainstem [4682 multi-frame micrographs composed of 21 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SY, Garringer HJ, Newell KL, Vidal R, Apostolova LG, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
435.6 GB | 2.39 - 3.7 Å | |
2024-06-04 | In vitro TDP-43 amyloid fibrils [1641 multi-frame micrographs composed of 40 frames each in TIFF format] | Sharma K, Schmidt M, Fändrich M [Pubmed: 38212334] [DOI: 10.1038/s41467-023-44489-0] |
280.1 GB | 3.76 - 4.05 Å | |
2024-06-04 | Cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts [284 multi-frame micrographs composed of 6 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
21.4 GB | — | |
2024-06-04 | Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 deletion [278 multi-frame micrographs composed of 6 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
18.5 GB | — | |
2024-06-04 | Cryo-electron tomogram of mitochondria in cryo-FIB milled mouse embryonic fibroblasts with OPA1 overexpression [258 multi-frame micrographs composed of 4 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
8.8 GB | — | |
2024-06-03 | The Cryo-EM 3D image reconstruction of isolated Lethocerus indicus Z-discs [3 tilt series in MRC format] | Yeganeh FA, Summerill C, Hu Z, Rahmani H, Taylor DW, Taylor KA [Pubmed: 37661214] [DOI: 10.1007/s10974-023-09657-1] |
23.0 GB | — | |
2024-05-29 | Cryo electron microscopy micrographs of high molecular weight fractions from yeast native cell extracts [51497 multi-frame micrographs composed of 972 frames each in EER format] | Schmidt L, Tueting C, Kyrilis F, Hamdi F, Semchonok DA, Kastritis PL [Pubmed: 38730276] [DOI: 10.1038/s42003-024-06204-7] |
23.8 TB | 3.21 Å | |
2024-05-29 | Cryo-EM of 9-6-17 Tulane virus with DTT treatment [771 multi-frame micrographs composed of 30 frames each in TIFF format] | Sun CS, Jiang WJ [Pubmed: 38254719] [DOI: 10.3390/biom14010119] |
165.8 GB | 2.63 Å | |
2024-05-20 | Cryo-EM structure of full-length ERGIC-53 in complex with MCFD2 [6345 multi-frame micrographs composed of 48 frames each in TIFF format] | Watanabe S, Inaba K [Pubmed: 38493152] [DOI: 10.1038/s41467-024-46747-1] |
1.4 TB | 2.53 - 6.76 Å | |
2024-05-20 | Cryo-EM structure of the CAK-THZ1 complex [multiple data sets in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
4.7 TB | 1.9 Å | |
2024-05-20 | Cryo-EM micrographs of human α1B/βI+βIVb microtubules bound to GMPCPP decorated with TTLL6 [2770 micrographs in MRC format] | Zehr EA, Roll-Mecak A [Pubmed: 38658656] [DOI: 10.1038/s41589-024-01599-0] |
146.9 GB | 3.6 Å | |
2024-05-20 | Cryo-EM structure of the CAK-CT7030 complex [10017 multi-frame micrographs composed of 909 frames each in EER format] | Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
3.7 TB | 1.9 Å | |
2024-05-20 | Cryo-EM of the human CAK: Data for 1.73 Å-resolution reconstruction [multiple data sets in EER format] | Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
12.1 TB | 1.7 Å | |
2024-05-20 | Structural basis of human U5 snRNP late biogenesis and recycling (single particle cryo-EM dataset) [multiple data sets in EER and MRC formats] | Riabov Bassat D, Phillips AW, Plaschka C [Pubmed: 38467876] [DOI: 10.1038/s41594-024-01243-4] |
1.8 TB | 2.6 - 4.6 Å | |
2024-05-20 | Structure of an ALYREF-exon junction complex hexamer [multiple data sets in EER and MRC formats] | Pacheco-Fiallos B, Vorländer MK, Plaschka C [Pubmed: 37020021] [DOI: 10.1038/s41586-023-05904-0] |
6.6 TB | 2.4 Å | |
2024-05-20 | Raw data used to generate the structure of cortactin bound to the Arp2/3 complex [8970 multi-frame micrographs composed of 38 frames each in TIFF format] | Fregoso FE, Boczkowska M, Rebowski G, Carman PJ, Van Eeuwen T, Dominguez R [Pubmed: 37898612] [DOI: 10.1038/s41467-023-42229-y] |
2.9 TB | 2.89 Å | |
2024-05-16 | Cryo-EM structure of apo-CAK [5805 multi-frame micrographs composed of 981 frames each in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
2.3 TB | 2.3 Å | |
2024-05-16 | Cryo-ET dataset on lamellae of Dictyostelium discoideum cells [213 tilt-series in MRC format] [213 tilt series in MRC format] | Tuijtel MW, Kreysing JP, Welsch S, Hummer G, Beck M, Turoňová B, Cruz-León S [Pubmed: 38669330] [DOI: 10.1126/sciadv.adk6285] |
382.6 GB | 3.9 Å | |
2024-05-16 | In situ cryo-electron tomography of Saccharomyces cerevisiae [37 multi-frame micrographs composed of 252 frames each in EER format] | Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr. EE, Drulyte I [Pubmed: 38512070] [DOI: 10.1107/S2059798324001840] |
3.1 GB | — | |
2024-05-16 | The cryo-electron microscopy structure of a Vitiosangium bacterial gasdermin in an slinky-like oligomeric conformation [8156 multi-frame micrographs composed of 50 frames each in TIFF format] | Johnson AG, Mayer ML, Schaefer SL, McNamara-Bordewick NK, Hummer G, Kranzusch PJ [Pubmed: 38509367] [DOI: 10.1038/s41586-024-07216-3] |
2.1 TB | 3.3 Å | |
2024-05-14 | Cryo-EM structure of CAK in complex with nucleotide analogue ATPgS [5781 multi-frame micrographs composed of 981 frames each in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
2.3 TB | 1.9 Å |