Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
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The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
We have seen a large number of SARS-CoV-2 structures being determined rapidly and deposited into the PDB and EMDB, which provides a starting point for structure-guided drug discovery. In order to validate and reanalyze the data by the cryo-EM community, we would like to make the following urgent appeal. a) If you have deposited any cryo-EM structures related to SARS-CoV-2 to the EMDB (and possibly the PDB), please deposit the raw data to EMPIAR. b) If you have collected cryo-EM data related to SARS-CoV-2 but have not yet deposited a structure, please consider depositing the raw data to EMPIAR, so that the cryo-EM community could contribute to processing and model-building.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-02-22 |  |
Light and electron microscopy continuum-resolution imaging of 3D cell cultures [19 multi-frame micrographs composed of 1 frames each in MRC format] | DImprima EDI, Garcia Montero MGM, Gawrzak, SG, Ronchi PR, Zagoriy IZ, Schwab YS, Jechlinger JS, Mahamid JM S-BIAD610 |
72.9 GB | — |
| 2023-02-22 |  |
Electron cryo-tomography data of HeLa cells expressing untagged Cidec [multiple data sets in MRC format] | Ganeva I, Lim K, Boulanger J, Hoffmann PC, Muriel O, Borgeaud AC, Hagen WJH, Savage DB, Kukulski W [Pubmed: 36800289] [DOI: 10.1016/j.celrep.2023.112107] EMD-16454 |
42.8 GB | — |
| 2023-02-22 |  |
Electron cryo-tomography data of HeLa cells expressing Cidec-EGFP [multiple data sets in MRC format] | Ganeva I, Lim K, Boulanger J, Hoffmann PC, Muriel O, Borgeaud AC, Hagen WJH, Savage DB, Kukulski W [Pubmed: 36800289] [DOI: 10.1016/j.celrep.2023.112107] EMD-16455 |
187.3 GB | — |
| 2023-02-22 |  |
Cryo-EM data of alpha-synuclein A53T fibril induced by CaCl2 [1799 micrographs in MRC format] | Wu KP EMD-32637,7wo0 |
158.0 GB | 2.7 Å |
| 2023-02-17 |  |
Principles of mitoribosomal small subunit assembly in eukaryotes [multiple data sets in TIFF format] | Harper NJ, Burnside C, Klinge S [Pubmed: 36482135] [DOI: 10.1038/s41586-022-05621-0] EMD-26966,EMD-26967,EMD-26968,EMD-26969,EMD-26970,EMD-26971,EMD-27249,EMD-27250,EMD-27251,8csp,8csq,8csr,8css,8cst,8csu,8d8j,8d8k,8d8l |
73.6 TB | 2.36 - 3.8 Å |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Saccharomyces cerevisiae [109 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
4.8 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Vero cells [46 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
7.1 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Rhodospirillum rubrum [43 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
5.7 GB | — |
| 2023-02-17 |  |
Cryo-EM micrographs of full-length human BIRC6 dimer [11578 multi-frame micrographs composed of 40 frames each in TIFF format] | Ehrmann JF, Grabarczyk DB, Clausen T [Pubmed: 36758105] [DOI: 10.1126/science.ade8873] EMD-15668,8atx |
3.0 TB | 7.0 Å |
| 2023-02-16 |  |
Enp1-TAP associated immature ribosomal particles from S. cerevisiae [multiple data sets in TIFF format] | Milkereit P, Pöll G [Pubmed: 36996028] [DOI: 10.1371/journal.pone.0283698] EMD-16349,EMD-16360,EMD-16361,EMD-16348,EMD-16350,EMD-16358,EMD-16359,EMD-16351,8c01 |
1.3 TB | 2.7 - 4.3 Å |
| 2023-02-16 |  |
Cryo-EM structure of Macrophomina phaseolina macrophomene synthase [multiple data sets in TIFF format] | Adachi N, Mori T, Senda T, Abe I [Pubmed: 35650436] [DOI: 10.1038/s41586-022-04773-3] EMD-32531,EMD-32532,7wij |
3.1 TB | 3.17 - 4.0 Å |
| 2023-02-15 |  |
Structural basis of a transcription pre-initiation complex on a divergent promoter [51 tilt series in TIFF format] | Gorbea Colón JJ, Palao L, Chen SF, Kim HJ, Snyder L, Chang YW, Tsai KL, Murakami K [Pubmed: 36731470] [DOI: 10.1016/j.molcel.2023.01.011] EMD-28023 |
151.3 GB | 26.0 Å |
| 2023-02-15 |  |
Structural basis of a transcription pre-initiation complex on a divergent promoter [55 tilt series in TIFF format] | Gorbea Colón JJ, Palao L, Chen SF, Kim HJ, Snyder L, Chang YW, Tsai KL, Murakami K [Pubmed: 36731470] [DOI: 10.1016/j.molcel.2023.01.011] EMD-28024 |
105.8 GB | 36.0 Å |
| 2023-02-15 |  |
Enp1-TAP associated immature ribosomal particles from S. cerevisiae depleted of rpS21 [8303 multi-frame micrographs composed of 40 frames each in TIFF format] | Milkereit P, Pöll G [Pubmed: 36996028] [DOI: 10.1371/journal.pone.0283698] EMD-16347,EMD-16362,EMD-16363,EMD-16346,8c00 |
1.3 TB | 2.9 - 3.3 Å |
| 2023-02-15 |  |
Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and albicidin stabilised by ADPNP [14469 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] EMD-14570,7z9c |
5.1 TB | 3.06 Å |
| 2023-02-14 |  |
Nudaurelia capensis omega virus procapsid at pH7.6 (insect cell expressed VLPs) [multiple data sets in MRC format] | Castells-Graells R, Hesketh EL, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP EMD-15134,8a41 |
8.5 TB | 4.88 Å |
| 2023-02-14 |  |
Nudaurelia capensis omega virus maturation intermediate captured at pH6.25 (insect cell expressed VLPs) [multiple data sets in MRC format] | Castells-Graells R, Hesketh EL, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP EMD-15209,8a6j |
8.6 TB | 4.8 Å |
| 2023-02-14 |  |
Single-particle cryo–negative-stain EM dataset of the compact conformer of kinesin-1 (Kif5C/KLC1) [multiple data sets in TIFF format] | Weijman JF, Yadav SKN, Surridge KJ, Cross JA, Borucu U, Mantell J, Woolfson DN, Schaffitzel C, Dodding MP [Pubmed: 36112680] [DOI: 10.1126/sciadv.abp9660] EMD-15343 |
1.7 TB | 29.1 Å |
| 2023-02-14 |  |
Slx9-TAP associated immature ribosomal particles from S. cerevisiae depleted of rpS21 [6463 multi-frame micrographs composed of 40 frames each in TIFF format] | Milkereit P, Pöll G [Pubmed: 36996028] [DOI: 10.1371/journal.pone.0283698] EMD-16352 |
1.1 TB | 3.3 Å |
| 2023-02-14 |  |
Mycobacterium phage Ogopogo [2220 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] EMD-28020,8ecn |
1.4 TB | 2.7 Å |
| 2023-02-14 |  |
Microbacterium phage Oxtober96 [10437 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] EMD-28021,8eco |
2.7 TB | 2.2 Å |
| 2023-02-13 |  |
Nudaurelia capensis omega virus maturation intermediate captured at pH5.9 (insect cell expressed VLPs) [multiple data sets in MRC format] | Castells-Graells R, Hesketh EL, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP EMD-15112,8a3c |
8.3 TB | 3.92 Å |
| 2023-02-13 |  |
Nudaurelia capensis omega virus maturation intermediates captured at pH5.6 (insect cell expressed VLPs) [multiple data sets in MRC format] | Castells-Graells R, Hesketh EL, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP EMD-15209,8a6j |
13.7 TB | 4.8 Å |
| 2023-02-13 |  |
Spinacia oleracea endogenous cytochrome b6f complex [7651 multi-frame micrographs composed of 40 frames each in TIFF format] | Jaciuk M, Koziej L, Pintscher S, Indyka P, Rawski M, Glatt S [Pubmed: 36638176] [DOI: 10.1126/sciadv.add9688] EMD-15027,7zyv |
2.9 TB | 2.13 Å |
| 2023-02-13 |  |
Tobacco mosaic virus, imaged on a JEOL CRYOARM 300 and Direct Electron Apollo [3402 multi-frame micrographs composed of 45 frames each in TIFF format] | Bhella D, Love AJ, Streetley J, Taliansky M, McGeachy K, Bukharova T EMD-16572 |
1.1 TB | 1.85 Å |
