Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-06-12 |  |
1.6Å Apoferritin from 200kV Glacios with Selectris Falcon 4 [4984 multi-frame micrographs composed of 371 frames each in EER format] | Koh A, Khavnekar S, Yang W, Karia D, Cats D, van der Ploeg R, Grollios F, Raschdorf O, Kotecha A, Němeček D [Pubmed: 35377368] [DOI: 10.3791/63519] |
754.4 GB | 1.635 Å |
| 2024-06-12 |  |
Graphene-sandwiched spike [2200 multi-frame micrographs composed of 32 frames each in TIFF format] | Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW [Pubmed: 38252835] [DOI: 10.1073/pnas.2309384121] |
1.5 TB | 2.5 Å |
| 2024-06-12 |  |
Cryo electron tomography of human Alzheimer's disease brain tissue [3 tilt series in MRC format] | Creekmore BC, Kixmoeller K, Black BE, Lee EB, Chang Y-W [Pubmed: 38531877] [DOI: 10.1038/s41467-024-47066-1] |
3.2 GB | — |
| 2024-06-12 |  |
Cryo-EM of (L,D)-2NapFF micelle [6792 multi-frame micrographs composed of 40 frames each in MRC format] | Sonani RR, Bianco S, Dietrich B, Doutch J, Draper ER, Adams DJ, Egelman EH [Pubmed: 38464674] [DOI: 10.1016/j.xcrp.2024.101812] |
1.4 TB | 3.3 Å |
| 2024-06-12 |  |
Cryo-EM of (L,L)-2NapFF micelle [5775 multi-frame micrographs composed of 40 frames each in TIFF format] | Sonani RR, Bianco S, Dietrich B, Doutch J, Draper ER, Adams DJ, Egelman EH [Pubmed: 38464674] [DOI: 10.1016/j.xcrp.2024.101812] |
895.7 GB | 3.3 Å |
| 2024-06-12 |  |
Single-particle cryo-EM structures of PNPase in complex with the RNA chaperone Hfq and regulatory RNA [6271 multi-frame micrographs composed of 38 frames each in TIFF format] | Dendooven T, Sinha D, Roeselová A, Cameron TA, De Lay NR, Luisi BF, Bandyra KJ [Pubmed: 34157309] [DOI: 10.1016/j.molcel.2021.05.032] |
6.8 TB | 3.7 Å |
| 2024-06-11 |  |
Single particle cryo-EM of H. thermophilus chaperonin complex [5650 multi-frame micrographs composed of 50 frames each in TIFF format] | Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S [Pubmed: 38492570] [DOI: 10.1016/j.str.2024.02.012] |
1.3 TB | 2.6 Å |
| 2024-06-11 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 1-68 in complex with prefusion SARS-CoV-2 spike glycoprotein [5061 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L [Pubmed: 33789084] [DOI: 10.1016/j.chom.2021.03.005] |
1.4 TB | 3.8 Å |
| 2024-06-11 |  |
CryoEM of Tropomyosin-receptor kinase fused gene protein (TRK-fused gene protein; TFG) Low Complexity Domain (residues 237-327) G269V mutant, amyloid fibers [15192 micrographs in MRC format] | Rosenberg GM, Abskharon R, Boyer DR, Ge P, Sawaya MR, Eisenberg DS [Pubmed: 38077690] [DOI: 10.1093/pnasnexus/pgad402] |
1.3 TB | 2.84 Å |
| 2024-06-11 |  |
Single-particle cryo-EM unaligned micrographs of antibody SKW11 in complex with Western Equine Encephalitis Virus-Like Particles [10021 multi-frame micrographs composed of 40 frames each in TIFF format] | Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M [Pubmed: 37295404] [DOI: 10.1016/j.cell.2023.05.019] |
1.4 TB | 6.1 Å |
| 2024-06-11 |  |
Polymerase module of yeast CPF in complex with the yPIM of Cft2 [5118 multi-frame micrographs composed of 41 frames each in TIFF format] | Rodríguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA [Pubmed: 35584695] [DOI: 10.1016/j.molcel.2022.04.021] |
868.2 GB | 2.8 Å |
| 2024-06-11 |  |
Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA [19524 multi-frame micrographs composed of 40 frames each in TIFF format] | Rodríguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA [Pubmed: 35584695] [DOI: 10.1016/j.molcel.2022.04.021] |
3.5 TB | 2.6 Å |
| 2024-06-11 |  |
Polymerase module of CPF in complex with Mpe1 and a pre-cleaved CYC1 RNA [11856 multi-frame micrographs composed of 50 frames each in TIFF format] | Rodríguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA [Pubmed: 35584695] [DOI: 10.1016/j.molcel.2022.04.021] |
2.3 TB | 2.7 Å |
| 2024-06-11 |  |
Cryo-EM of 9-6-17 Tulane virus without DTT treatment [503 multi-frame micrographs composed of 30 frames each in TIFF format] | Sun CS, Jiang WJ [Pubmed: 38254719] [DOI: 10.3390/biom14010119] |
102.0 GB | 2.73 Å |
| 2024-06-11 |  |
Cryo-EM micrographs of human RYBP-PRC1 bound to H2Aub1 mononucleosome [10669 micrographs in MRC format] | Ciapponi MC, Karlukova EK, Schkölziger SS, Benda CB, Müller JM [Pubmed: 38528151] [DOI: 10.1038/s41594-024-01258-x] |
935.6 GB | 3.18 Å |
| 2024-06-07 |  |
Taf15 amyloid filaments - Individual 1, motor cortex [3657 multi-frame micrographs composed of 40 frames each in TIFF format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SY, Garringer HJ, Newell KL, Vidal R, Apostolova LG, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
587.8 GB | 2.27 Å |
| 2024-06-07 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 1-87 in complex with prefusion SARS-CoV-2 spike glycoprotein [3135 multi-frame micrographs composed of 60 frames each in TIFF format] | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L [Pubmed: 33789084] [DOI: 10.1016/j.chom.2021.03.005] |
812.5 GB | 3.55 Å |
| 2024-06-07 |  |
Single particle cryo-EM of H. thermoluteolus chaperonin complex [1233 multi-frame micrographs composed of 171 frames each in EER format] | Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S [Pubmed: 38492570] [DOI: 10.1016/j.str.2024.02.012] |
914.8 GB | 2.5 Å |
| 2024-06-07 |  |
Single-particle cryo-EM unaligned micrographs of neutralizing antibody 910-30 in complex with SARS-CoV-2 spike glycoprotein (disrupted form) [3226 multi-frame micrographs composed of 50 frames each in TIFF format] | Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ [Pubmed: 34587480] [DOI: 10.1016/j.celrep.2021.109771] |
889.5 GB | 5.78 Å |
| 2024-06-06 |  |
Mycobacterium phage Adephagia [5688 multi-frame micrographs composed of 50 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.8 TB | 2.4 Å |
| 2024-06-06 |  |
Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome [multiple data sets in TIFF and MRC formats] | Eek P, Song T [Pubmed: 38809771] [DOI: 10.7554/eLife.94869] |
5.9 TB | 3.1 Å |
| 2024-06-06 |  |
SBF-SEM datasets of chaetoblasts constructing bristles in Platynereis dumerilii [multiple data sets in PNG format] | Ikeda KN, Belevich I, Zelaya-Lainez L, Orel L, Füssl J, Gumulec J, Hellmich C, Jokitalo E, Raible F [Pubmed: 38740737] [DOI: 10.1038/s41467-024-48044-3] |
79.7 GB | — |
| 2024-06-06 |  |
Single-particle cryo-EM unaligned micrographs of neutralizing antibody 910-30 in complex with prefusion SARS-CoV-2 spike glycoprotein [3781 multi-frame micrographs composed of 50 frames each in TIFF format] | Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ [Pubmed: 34587480] [DOI: 10.1016/j.celrep.2021.109771] |
1.0 TB | 4.75 Å |
| 2024-06-06 |  |
Single-particle cryo-EM unaligned micrographs of antibody SKT05 in complex with Western Equine Encephalitis Virus-Like Particles [5133 multi-frame micrographs composed of 50 frames each in TIFF format] | Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M [Pubmed: 37295404] [DOI: 10.1016/j.cell.2023.05.019] |
796.0 GB | 6.1 Å |
| 2024-06-05 |  |
Cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts [245 multi-frame micrographs composed of 6 frames each in TIFF format] | Fry MY, Navarro PP, Ananda VY, Ge Y, McDonald JL, Hakim P, Luce BE, Lugo CM, Chao LH [Pubmed: 38225406] [DOI: 10.1038/s44318-024-00027-2] |
20.2 GB | — |
