Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-02-10 |  |
High resolution C. elegans 80S ribosome single particle cryoEM structure [8337 multi-frame micrographs composed of 51 frames each in TIFF format] | Sehgal E., Balasco Serrao V.H., Arribere J. [Pubmed: 39209556] [DOI: 10.1261/rna.080103.124] |
2.8 TB | 2.59 - 2.63 Å |
| 2025-02-10 |  |
Vibrio cholerae DdmD-DdmE holo complex [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 38870273] [DOI: 10.1126/science.adq0534] |
1.6 TB | 2.56 Å |
| 2025-02-10 |  |
Vibrio cholerae DdmD apo complex [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 38870273] [DOI: 10.1126/science.adq0534] |
1.5 TB | 2.55 Å |
| 2025-02-10 |  |
HSV-1 DNA polymerase-processivity factor complex in halted elongation state [multiple data sets in TIFF and MRC formats] | Gustavsson E, Grünewald K, Elias P, Hällberg BM [Pubmed: 38806233] [DOI: 10.1093/nar/gkae374] |
1.5 TB | 2.4 - 2.97 Å |
| 2025-02-10 |  |
Single particle analysis datasets of in vitro grown aSyn filaments [multiple data sets in MRC format] | Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R [Pubmed: 39399048] [DOI: 10.1101/2024.09.23.24313864] |
1023.5 GB | 2.7 Å |
| 2025-02-04 |  |
cryo-EM structure of human tRNA(GlnUUG) [6112 micrographs in MRC format] | Biela AP, Glatt S | 536.7 GB | 4.95 Å |
| 2025-02-04 |  |
Structure of 4R2N ClearTau [25793 multi-frame micrographs composed of 1150 frames each in EER format] | Tatli M [Pubmed: 37402718] [DOI: 10.1038/s41467-023-39314-7] |
8.4 TB | 3.1 Å |
| 2025-02-04 |  |
Cryo-EM of Tetrahymena ribozyme [multiple data sets in TIFF and MRC formats] | Kretsch RC, Li S, Pintilie G, Palo M, Case D, Zhang K, Das R, Chiu W [DOI: 10.1101/2025.01.23.634578] |
3.7 TB | 2.2 - 2.31 Å |
| 2025-02-04 |  |
Cryo-electron tomographic investigation of native hippocampal glutamatergic synapses [multiple data sets in TIFF format] | Matsui A, Spangler CJ, Elferich J, Gouaux E [Pubmed: 39495821] [DOI: 10.7554/eLife.98458] |
9.5 GB | — |
| 2025-02-04 |  |
Cryo-electron tomography data acquired on S. cerevisiae (BY4741) cryo-FIB lamellae [multiple data sets in TIFF and MRC formats] | Spindler MC, Mahamid J [Pubmed: 39059370] [DOI: 10.1016/j.molcel.2024.06.024] |
165.4 GB | 10.2 - 16.2 Å |
| 2025-02-04 |  |
Cryo-electron tomography of FIB-milled neuronal synapses in cultured primary neurons [14 tilt series in MRC format] | Held RG, Liang J, Brunger AT [Pubmed: 38923992] [DOI: 10.1073/pnas.2403136121] |
47.9 GB | — |
| 2025-02-04 |  |
Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex [multiple data sets in TIFF and DM4 formats] | Schmitz M, Querques I, Oberli S, Chanez C, Jinek M [Pubmed: 36435179] [DOI: 10.1016/j.cell.2022.11.009] |
4.5 TB | 3.3 - 4.1 Å |
| 2025-02-04 |  |
cryo-EM micrographs of RNF168(1-113)/UbcH5c~Ub/H2AK13Ub nucleosome complex [8480 micrographs in MRC format] | Ai HS, Tong ZB, Deng ZH, Tian CL, Liu L, Pan M [DOI: 10.1101/2024.01.02.573964] |
744.4 GB | 3.27 - 3.52 Å |
| 2025-02-04 |  |
Micrographs for EMD-44524 and EMD-44646: Structures of DosP R97A without c-di-GMP [7192 multi-frame micrographs composed of 50 frames each in TIFF format] | Kober DL, Kumar P [Pubmed: 39511182] [DOI: 10.1038/s41467-024-53942-7] |
4.2 TB | 3.65 Å |
| 2025-02-04 |  |
Wild type ATTR amyloid fibril from senile systemic amyloidosis [1943 multi-frame micrographs composed of 40 frames each in TIFF format] | Steinebrei M, Schmidt M, Fändrich M [Pubmed: 36302762] [DOI: 10.1038/s41467-022-33591-4] |
332.2 GB | 2.78 Å |
| 2025-02-04 |  |
Structure of GGCX-BGP-MK4 complex [2016 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang R.W, Qi X.Q. [Pubmed: 39880952] [DOI: 10.1038/s41586-024-08484-9] |
947.3 GB | 3.06 Å |
| 2025-02-04 |  |
single-particle cryoEM data of AsCas12f-sgRNA-DNA complex [7591 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhao M, Liu C [Pubmed: 37400536] [DOI: 10.1038/s41589-023-01380-9] |
3.9 TB | 2.9 Å |
| 2025-02-04 |  |
Single particle cryoEM data of Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle [11615 multi-frame micrographs composed of 75 frames each in TIFF format] | You Q, Feng X, Cai Y, Baylin SB, Li H [Pubmed: 39341999] [DOI: 10.1038/s42003-024-06919-7] |
6.6 TB | 3.7 Å |
| 2025-02-04 |  |
Single particle cryoEM data of Nucleosome core particle containing an 8-oxoG damage site [5135 multi-frame micrographs composed of 50 frames each in TIFF format] | You Q, Feng X, Cai Y, Baylin SB, Li H [Pubmed: 39341999] [DOI: 10.1038/s42003-024-06919-7] |
1.8 TB | 3.3 Å |
| 2025-02-04 |  |
Microtubule plus end architecture in presence of the ciliary tip module. [34 tilt series in TIFF format] | Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A. | 58.0 GB | — |
| 2025-02-04 |  |
Structure of the IFN-lambda3/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta [2928 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang B, Grubbe WS, Mendoza JL, Zhao M [Pubmed: 39827213] [DOI: 10.1038/s41467-025-56119-y] |
1.6 TB | 3.0 Å |
| 2025-02-03 |  |
Influenza A virus Hemagglutinin H5/Vietnam/1204/2004 in complex with D04 Fab [17183 multi-frame micrographs composed of 28 frames each in TIFF format] | Ferreira Ramos AS, Bajic G [Pubmed: 39854479] [DOI: 10.1126/sciimmunol.ado9572] |
2.9 TB | 3.1 Å |
| 2025-02-03 |  |
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV [34508 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Oldham ML, Manon V, Chen J [Pubmed: 38805290] [DOI: 10.1073/pnas.2320879121] |
11.3 TB | 3.5 Å |
| 2025-02-03 |  |
Cryogenic electron microscopy of chameleon-plunged acetyl-CoA decarbonylase/synthase [13892 multi-frame micrographs composed of 40 frames each in TIFF format] | Biester A, Drennan CL [Pubmed: 39361653] [DOI: 10.1073/pnas.2410995121] |
1.8 TB | 2.8 - 3.2 Å |
| 2025-02-03 |  |
Cryo-EM structures of human vitamin C transporter SVCT1 [multiple data sets in TIFF format] | Kobayashi TA, Shimada H, Sano FK, Itoh Y, Enoki S, Okada Y, Kusakizako T, Nureki O [Pubmed: 38956111] [DOI: 10.1038/s41467-024-49899-2] |
2.9 TB | 2.49 - 3.5 Å |
