Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-04-07 |  |
Single-particle cryo-EM unaligned micrographs of Sevenless extracellular domain in complex with Bride of Sevenless extracellular domain (pH 6.6) [12402 multi-frame micrographs composed of 50 frames each in TIFF format] | — | 3.0 TB | 3.09 - 3.19 Å |
| 2025-04-07 |  |
Cryo-EM Structures of human LINE-1 ORF2p target-primed reverse transcription complex [multiple data sets in TIFF and MRCS formats] | Ghanim GEG [Pubmed: 40048554] [DOI: 10.1126/science.ads8412] |
5.1 TB | 2.3 - 3.1 Å |
| 2025-04-07 |  |
Dynamic microtubule plus end architecture in presence of EB3. [51 tilt series in TIFF format] | Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A. [Pubmed: 39856351] [DOI: 10.1038/s41594-025-01483-y] |
75.9 GB | — |
| 2025-04-07 |  |
Cryo-EM of SARS-CoV-2 pre-incorporation replication-transcription complex with ATP [11657 multi-frame micrographs composed of 50 frames each in TIFF format] | Malone BF, Perry JK, Olinares PDB, Lee HW, Chen J, Appleby TC, Feng JY, Bilello JP, Ng H, Sotiris J, Ebrahim M, Chua EYD, Mendez JH, Eng ET, Landick R, Götte M, Chait BT, Campbell EA, Darst SA [Pubmed: 36725929] [DOI: 10.1038/s41586-022-05664-3] |
2.8 TB | 3.09 Å |
| 2025-04-07 |  |
Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes [4170 multi-frame micrographs composed of 1 frames each in MRC format] | Mishra RK, Sharma P, Khaja FT, Uday AB, Hussain T [Pubmed: 38458197] [DOI: 10.1016/j.str.2024.02.006] |
1.3 TB | 2.71 - 2.88 Å |
| 2025-04-03 |  |
Cryo-ET of RPE-1 G1 and metaphase cells and HeLa oligonucleosomes [multiple data sets in TIFF and MRC formats] | Chen JK, Liu T, Cai S, Ruan W, Ng CT, Shi J, Surana U, Gan L [Pubmed: 40097852] [DOI: 10.1038/s44318-025-00407-2] |
938.8 GB | 33.7 Å |
| 2025-04-03 |  |
Cryo-ET dataset of FIB-milled HIV-1 infected human monocyte-derived macrophages [multiple data sets in MRC format] | Kreysing JP, Welsch S, Turoňová B, Beck M [Pubmed: 39826544] [DOI: 10.1016/j.cell.2024.12.008] |
560.6 GB | 24.5 - 33.2 Å |
| 2025-03-31 |  |
The Anti-Mullerian Hormone prodomain in complex with the growth factor and 6E11 fab [multiple data sets in TIFF and MRC formats] | Howard JA, Thompson TB [Pubmed: 39805014] [DOI: 10.1073/pnas.2418088122] |
4.1 TB | 3.2 - 3.39 Å |
| 2025-03-31 |  |
CryoEM structural characterization of α-Synuclein Oligomer [stack of 2528 particles in MRCS format] | Santos J, Cuellar J, Pallarès I, Valpuesta JM, Ventura S [Pubmed: 38683963] [DOI: 10.1021/jacs.4c02262] |
37.3 GB | 18.3 Å |
| 2025-03-28 |  |
Pre-turnover condition dataset for Bacillus subtilis class Ib ribonucleotide reductase [3476 multi-frame micrographs composed of 50 frames each in TIFF format] | Xu D, Thomas WC, Burnim AA, Ando N [Pubmed: 40075098] [DOI: 10.1038/s41467-025-57735-4] |
1.1 TB | 2.42 - 3.9 Å |
| 2025-03-28 |  |
Cryo-electron tomography of synaptosomes [multiple data sets in MRC format] | Rong Sun RS [DOI: 10.1083/jcb.202406133] |
760.7 GB | 24.0 - 26.0 Å |
| 2025-03-24 |  |
Human Elp123 in complex with glutamine tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine [4214 multi-frame micrographs composed of 40 frames each in TIFF format] | Jaciuk M [Pubmed: 38750017] [DOI: 10.1038/s41467-024-48251-y] |
1.3 TB | 2.87 Å |
| 2025-03-24 |  |
Array Tomography of Pdzd8 cKO and Fkbp8 KD MEF [multiple data sets in PNG format] | Hirabayashi Y, Nakamura K | 5.9 GB | — |
| 2025-03-21 |  |
Unaligned cryo-EM micrographs of HCN4 channel bound to Ivabradine [31670 multi-frame micrographs composed of 40 frames each in TIFF format] | Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A [Pubmed: 38917012] [DOI: 10.1073/pnas.2402259121] |
9.3 TB | 3.6 Å |
| 2025-03-21 |  |
Single-particle cryo-EM unaligned micrographs of antibody T5-1E08 in complex with H7N9 Influenza Hemagglutinin Trimer (A/Shanghai/2/13) [3383 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G [DOI: 10.1016/j.str.2025.02.010] |
869.1 GB | 3.18 Å |
| 2025-03-21 |  |
Single-particle cryo-EM unaligned micrographs of Sevenless extracellular domain (pH 6.6) [5365 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G [Pubmed: 39510067] [DOI: 10.1016/j.molcel.2024.10.017] |
1.3 TB | 3.06 Å |
| 2025-03-21 |  |
Single-particle cryo-EM unaligned micrographs of antibody T5-1E11 in complex with stabilized H1N1 Influenza Hemagglutinin Trimer (A/Kiev/1/57) [6586 multi-frame micrographs composed of 40 frames each in TIFF format] | Cerutti G [DOI: 10.1016/j.str.2025.02.010] |
1.4 TB | 2.98 Å |
| 2025-03-20 |  |
Single-particle cryo-EM structure of the RNA chaperone Hfq in a translation repression complex Hfq-Crc-estA [13651 multi-frame micrographs composed of 47 frames each in TIFF format] | Dendooven T, Sonnleitner E, Bläsi U, Luisi BF [Pubmed: 36504222] [DOI: 10.15252/embj.2022111129] |
4.3 TB | 4.5 Å |
| 2025-03-20 |  |
Cryo electron micrographs of Plastid-encoded RNA polymerase transcription elongation complex (PEP-TEC) from Sinapis alba [33330 multi-frame micrographs composed of 40 frames each in TIFF format] | Webster MW [Pubmed: 38428394] [DOI: 10.1016/j.cell.2024.01.036] |
5.9 TB | 2.62 - 5.0 Å |
| 2025-03-20 |  |
Movies of ΔCag3 Mutant Cag T4SS from Helicobacter pylori [3373 multi-frame micrographs composed of 40 frames each in TIFF format] | Sheedlo MJ, Chung JM, Sawhney N, Durie CL, Cover TL, Ohi MD, Lacy DB [Pubmed: 32876048] [DOI: 10.7554/eLife.59495] |
688.7 GB | 3.0 - 3.1 Å |
| 2025-03-20 |  |
Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos [multiple data sets in TIFF format] | Jiang Y, Wang H, Boergens K, Rzepka N, Wang F, Hua Y [DOI: 10.1016/j.crmeth.2025.100989] |
996.4 GB | — |
| 2025-03-19 |  |
Cryo-electron tomography of optogenetically-induced lamellipodia [multiple data sets in MRC format] | Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takasaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T [DOI: 10.1101/2024.08.13.607852] |
57.8 GB | — |
| 2025-03-19 |  |
Cryo-EM data of hOAT4 [1 micrographs - focal pairs - unprocessed in TIFF format] | He JJ [Pubmed: 39146184] [DOI: 10.1016/j.celrep.2024.114628] |
1.1 TB | 3.1 Å |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after sonication [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 602.1 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after extrusion with a 200 nm filter [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 261.9 GB | — |
