Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-09-06 |  |
Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 2 min [2981 multi-frame micrographs composed of 51 frames each in TIFF format] | Abe KM, Li G, He Q, Grant T, Lim CJ | 824.4 GB | 3.47 Å |
| 2024-09-06 |  |
Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min [3432 multi-frame micrographs composed of 40 frames each in TIFF format] | Abe KM, Li G, He Q, Grant T, Lim CJ | 943.0 GB | 3.1 Å |
| 2024-09-06 |  |
cryo electron microscopy unaligned movie frames for single particle analysis of the Escherichia coli 70S ribosome with Paenilamicin B2 [7638 multi-frame micrographs composed of 1050 frames each in EER format] | Koller TO, Berger MJ, Morici M, Beckert B [Pubmed: 38826346] [DOI: 10.1101/2024.05.21.595107] |
4.3 TB | 2.2 - 2.4 Å |
| 2024-09-06 |  |
Cryo-EM structure of the full-length Pseudomonas aeruginosa bacteriophytochrome in its Pfr and Pr states [multiple data sets in TIFF and MRC formats] | Bodizs SB, Westenhoff SW [DOI: 10.1016/j.str.2024.08.008] |
19.3 TB | 2.95 Å |
| 2024-09-06 |  |
Human PRC2 - cross-linked 10 min [3274 multi-frame micrographs composed of 40 frames each in TIFF format] | Abe KM, Li G, He Q, Grant T, Lim CJ | 817.0 GB | 4.29 Å |
| 2024-09-06 |  |
Human PRC2 - RvLEAM(short) (1:6 molar ratio), 10 mM MgCl2 [4333 micrographs in MRC format] | Abe KM, Li G, He Q, Grant T, Lim C | 380.5 GB | 4.18 Å |
| 2024-09-03 |  |
ATTRG47E amyloid fibrils from hereditary ATTR amloidosis [12067 multi-frame micrographs composed of 2226 frames each in EER format] | Steinebrei M, Schmidt M, Fändrich M [Pubmed: 37993462] [DOI: 10.1038/s41467-023-43301-3] |
6.8 TB | 2.3673 Å |
| 2024-09-03 |  |
CryoEM Structure of the human Trace Amine-Associated Receptor 1 bound to Ro5256390 [7618 micrographs in MRC format] | Zilberg G, Parpounas AK, Warren AL, Yang S, Wacker D [Pubmed: 38168118] [DOI: 10.1038/s41467-023-44601-4] |
668.9 GB | 3.35 Å |
| 2024-09-03 |  |
AL amyloid fibril from the FOR103 light chain [2788 multi-frame micrographs composed of 40 frames each in TIFF format] | Pfeiffer PB, Karimi-Farsijani S, Schmidt M, Fändrich M [Pubmed: 38879609] [DOI: 10.1038/s41467-024-49520-6] |
504.3 GB | 2.92 Å |
| 2024-09-03 |  |
Volume correlative light X-ray and electron microscopy (CLXEM) of mouse cremaster muscle endothelial cells [multiple data sets in TIFF format] | Reglero-Real N, Pérez-Gutiérrez L, Saleeb R, Nourshargh S, Collinson L, Yoshimura A [DOI: 10.1016/j.xpro.2024.103257] |
79.2 GB | — |
| 2024-09-03 |  |
CryoEM movies of human tau amyloid fibrils extracted from an AD patient brain (in association with in situ cryoET) [10860 multi-frame micrographs composed of 38 frames each in TIFF format] | Gilbert MAG, Fatima N, Jenkins J, O'Sullivan TJ, Schertel A, Halfon Y, Wilkinson M, Morrema THJ, Geibel M, Read RJ, Ranson NA, Radford SE, Hoozemans JJM, Frank RAW [Pubmed: 38987603] [DOI: 10.1038/s41586-024-07680-x] |
1.4 TB | 3.0 Å |
| 2024-09-03 |  |
Structure of Aquifex aeolicus lumazine synthase by cryo-electron microscopy to 1.42 Å resolution [12657 multi-frame micrographs composed of 918 frames each in EER format] | Savva CG, Sobhy MA, De Biasio A, Hamdan SM [Pubmed: 38965901] [DOI: 10.1107/S2052252524005530] |
2.5 TB | 1.42 Å |
| 2024-09-03 |  |
Cryo-EM structure of 1.51 Angstroms mouse heavy-chain apoferritin in 290 nm gold foil holes (HexAuFoil) [multiple data sets in TIFF and MRC formats] | Wang CH, Wu KP, Chang YC | 3.4 TB | 1.51 Å |
| 2024-09-02 |  |
Cryo-ET of in vitro vaccinia core [38 tilt series in MRC format] | Liu J, Turoňová B [Pubmed: 38316878] [DOI: 10.1038/s41594-024-01218-5] |
42.9 GB | 7.7 - 13.4 Å |
| 2024-09-02 |  |
Cryo electron micrographs of 70S Escherichia coli ribosomes [4388 multi-frame micrographs composed of 35 frames each in TIFF format] | Gersteuer FG, Morici MM, Wilson DNW [Pubmed: 38503753] [DOI: 10.1038/s41467-024-46762-2] |
2.0 TB | 2.0 - 2.6 Å |
| 2024-08-29 |  |
Human calcium homeostasis modulator 1 (CALHM1) channel [3285 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
553.5 GB | 3.76 Å |
| 2024-08-29 |  |
Cryo-EM micrographs of human DNA polymerase θ helicase domain bound to inhibitor AB25583 [4500 multi-frame micrographs composed of 2051 frames each in EER format] | Ito F, Li Z, Minakhin L, Chandramouly G, Tyagi M, Betsch R, Krais JJ, Tiberi B, Johnson N, Chen XS, Pomerantz RT [Pubmed: 39143110] [DOI: 10.1038/s41467-024-51351-4] |
4.9 TB | 3.21 Å |
| 2024-08-29 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [688 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
69.7 GB | — |
| 2024-08-29 |  |
SPOT-RASTR - a cryo-EM specimen preparation technique that overcomes problems with preferred orientation and the air/water interface [stack of 230000 particles in MRCS format] | Ghazi Esfahani BGE, Randolph PR, Peng RP, Stroupe MES, Grant TG, Stagg SMS [Pubmed: 39108302] [DOI: 10.1093/pnasnexus/pgae284] |
304.6 GB | 3.58 Å |
| 2024-08-29 |  |
The Prothrombin-Prothrombinase Interaction [2390 micrographs in MRC format] | Stojanovski BM, Mohammed BM, Ruben EA, Summers B, Rau MJ, Fitzpatrick JAJ, Di Cera E [Pubmed: 35427420] [DOI: 10.1182/blood.2022015807] |
149.4 GB | 5.3 - 6.47 Å |
| 2024-08-29 |  |
Low-dose cryo-electron ptychography of Apoferritin at 4.0 mrad [90 diffraction images in BIG DATA VIEWER HDF5 format] | Küçükoğlu BK, Mohammed IM, Guerrero-Ferreira RCG, Kube MK, Radecke JR, Ribet SR, Varnavides GV, Leidl MLL, Lau KL, Nazarov SN, Myasnikov AM, Sachse CS, Müller-Caspary KMC, Ophus CO, Stahlberg HS [DOI: 10.1101/2024.02.12.579607] |
83.8 GB | 5.8 - 12.3 Å |
| 2024-08-28 |  |
CryoEM micrographs of HK97 small terminase in complex with DNA (2 datasets:550 and 1874 multi-frame micrographs composed of 50 frames in tif format) [multiple data sets in TIFF format] | Antson AA, Chechik M, Greive SJ, Jenkins HT [Pubmed: 39116131] [DOI: 10.1073/pnas.2406138121] |
549.9 GB | 2.92 - 3.0 Å |
| 2024-08-28 |  |
Human calcium homeostasis modulator 1 (CALHM1) channel, I109W point mutation [8664 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
1.8 TB | 2.8 Å |
| 2024-08-28 |  |
Human calcium homeostasis modulator 1 (CALHM1) channel, I109W point mutation in complex with ruthenium red [multiple data sets in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
4.6 TB | 3.91 - 4.73 Å |
| 2024-08-28 |  |
Cryoelectron microscopy of IL-21/IL-21R/common gamma signaling complex [3684 multi-frame micrographs composed of 51 frames each in TIFF format] | Abhiraman G.C., Jude K.M., Caveney N.A., Garcia K.C. [Pubmed: 37339051] [DOI: 10.1016/j.celrep.2023.112657] |
4.2 TB | 3.7 Å |
