Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-02-04 |  |
Single particle cryoEM data of Nucleosome core particle containing an 8-oxoG damage site [5135 multi-frame micrographs composed of 50 frames each in TIFF format] | You Q, Feng X, Cai Y, Baylin SB, Li H [Pubmed: 39341999] [DOI: 10.1038/s42003-024-06919-7] |
1.8 TB | 3.3 Å |
| 2025-02-04 |  |
Microtubule plus end architecture in presence of the ciliary tip module. [34 tilt series in TIFF format] | Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A. | 58.0 GB | — |
| 2025-02-04 |  |
Structure of the IFN-lambda3/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta [2928 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang B, Grubbe WS, Mendoza JL, Zhao M [Pubmed: 39827213] [DOI: 10.1038/s41467-025-56119-y] |
1.6 TB | 3.0 Å |
| 2025-02-03 |  |
Influenza A virus Hemagglutinin H5/Vietnam/1204/2004 in complex with D04 Fab [17183 multi-frame micrographs composed of 28 frames each in TIFF format] | Ferreira Ramos AS, Bajic G [Pubmed: 39854479] [DOI: 10.1126/sciimmunol.ado9572] |
2.9 TB | 3.1 Å |
| 2025-02-03 |  |
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV [34508 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Oldham ML, Manon V, Chen J [Pubmed: 38805290] [DOI: 10.1073/pnas.2320879121] |
11.3 TB | 3.5 Å |
| 2025-02-03 |  |
Cryogenic electron microscopy of chameleon-plunged acetyl-CoA decarbonylase/synthase [13892 multi-frame micrographs composed of 40 frames each in TIFF format] | Biester A, Drennan CL [Pubmed: 39361653] [DOI: 10.1073/pnas.2410995121] |
1.8 TB | 2.8 - 3.2 Å |
| 2025-02-03 |  |
Cryo-EM structures of human vitamin C transporter SVCT1 [multiple data sets in TIFF format] | Kobayashi TA, Shimada H, Sano FK, Itoh Y, Enoki S, Okada Y, Kusakizako T, Nureki O [Pubmed: 38956111] [DOI: 10.1038/s41467-024-49899-2] |
2.9 TB | 2.49 - 3.5 Å |
| 2025-02-03 |  |
Micrographs for EMD-45727, EMD-45667, EMD-45669, and EMD-45670: Structure of DosP-FLAG-R97A with c-di-GMP [9450 multi-frame micrographs composed of 55 frames each in EER format] | Kober DL, Kumar P [Pubmed: 39511182] [DOI: 10.1038/s41467-024-53942-7] |
4.3 TB | 3.1 Å |
| 2025-02-03 |  |
Cryo-EM images of B. megaterium gas vesicles in thin vitreous monolayers [4352 multi-frame micrographs composed of 60 frames each in TIFF format] | Huber ST, Jakobi AJ [Pubmed: 36868215] [DOI: 10.1016/j.cell.2023.01.041] |
2.3 TB | 3.2 Å |
| 2025-02-03 |  |
E.coli DNA gyrase in complex with 217 bp substrate DNA (chirally wrapped state) [8508 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E., Pakosz-Stepien Z, Liston J., Gittins O., Liston J.D., Pabis M., Heddle J.G., Ghilarov D. | 3.4 TB | 2.32 Å |
| 2025-02-03 |  |
Cryo-electron tomography of Mycobacterium smegmatis infected with bacteriophage Bxb1 [35 tilt series in MRC format] | Freeman K.G., Mondal S, Hatfull G.F., Park D | 954.4 GB | 11.65 Å |
| 2025-02-03 |  |
Class Ia ribonucleotide reductase with mechanism-based inhibitor N3CDP [6007 multi-frame micrographs composed of 30 frames each in TIFF format] | Westmoreland DE, Drennan CL [Pubmed: 39475643] [DOI: 10.1073/pnas.2417157121] |
1.9 TB | 2.6 Å |
| 2025-02-03 |  |
E.coli DNA gyrase in complex with cleaved 217 bp substrate DNA (chirally wrapped state) and moxifloxacin [8508 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E., Pakosz-Stepien Z, Liston J., Gittins O., Liston J.D., Pabis M., Heddle J.G., Ghilarov D. [Pubmed: 39589884] [DOI: 10.1073/pnas.2407398121] |
1.7 TB | 2.6 Å |
| 2025-02-03 |  |
ShCas12k in complex with a sgRNA and a dsDNA target [multiple data sets in TIFF and MRC formats] | Schmitz M, Querques I, Oberli S, Chanez C, Jinek M [Pubmed: 34759315] [DOI: 10.1038/s41586-021-04030-z] |
1.7 TB | 3.04 Å |
| 2025-02-03 |  |
Cryo-electron microscopy of mycobacteriophage Bxb1 particles [1301 multi-frame micrographs composed of 48 frames each in MRC format] | Freeman KF, Huet A, Conway JF, Hatfull GF | 964.3 GB | 3.0 Å |
| 2025-02-03 |  |
Single particle reconstruction of human apo TRPM8 channel in a closed state [multiple data sets in TIFF and MRCS formats] | Palchevskyi S, Czarnocki-Cieciura M, Vistoli G, Gervasoni S, Nowak E, Beccari AR, Nowotny M, Talarico C [Pubmed: 37857704] [DOI: 10.1038/s42003-023-05425-6] |
3.4 TB | 2.65 - 3.2 Å |
| 2025-02-03 |  |
Single particle reconstruction of E. coli TnsB in complex with right end fragment of Tn7 transposon [multiple data sets in TIFF and MRCS formats] | Kaczmarska Z, Czarnocki-Cieciura M, Rawski M, Nowotny M [Pubmed: 35654042] [DOI: 10.1016/j.molcel.2022.05.005] |
3.7 TB | 2.68 - 3.79 Å |
| 2025-02-03 |  |
Cryo electron micrographs of Coxsackievirus A9 bound with CL213 [12618 multi-frame micrographs composed of 40 frames each in TIFF format] | Plavec Z, Mitchell C, Buckner C, Butcher SJ [Pubmed: 39292620] [DOI: 10.1021/acs.jmedchem.4c00701] |
4.9 TB | 2.5 Å |
| 2025-01-30 |  |
Electron tomography of endosymbiotic bacteria inside a bacteriocyte of the cereal weevil Sitophilus oryzae [120 reconstructed volumes in MRC format] | Santarella-Mellwig RSM, Balmand SB, Schwab YS, Zaidman-Remy AZR | 1.0 GB | — |
| 2025-01-29 |  |
Cryo-ET tilt series of FIB-milled wild-type mouse embryonic stem cells [161 tilt series in MRC format] | Taniguchi R, Orniacki C, Kreysing JP, Zila V, Zimmerli CE, Böhm S, Turoňová B, Kräusslich H-G, Doye V, Beck M | 401.2 GB | 28.5 - 30.4 Å |
| 2025-01-29 |  |
Cryo-ET tilt series of FIB-milled Nup133-deficient mouse embryonic stem cells [164 tilt series in MRC format] | Taniguchi R, Orniacki C, Kreysing JP, Zila V, Zimmerli CE, Böhm S, Turoňová B, Kräusslich H-G, Doye V, Beck M | 419.9 GB | 30.1 - 33.4 Å |
| 2025-01-29 |  |
Cryo-ET tilt series of FIB-milled wild-type mouse neural progenitor cells [96 tilt series in MRC format] | Taniguchi R, Orniacki C, Kreysing JP, Zila V, Zimmerli CE, Böhm S, Turoňová B, Kräusslich H-G, Doye V, Beck M | 239.8 GB | 30.7 - 31.8 Å |
| 2025-01-29 |  |
Cryo-ET tilt series of FIB-milled Nup133-deficient mouse neural progenitor cells [144 tilt series in MRC format] | Taniguchi R, Orniacki C, Kreysing JP, Zila V, Zimmerli CE, Böhm S, Turoňová B, Kräusslich H-G, Doye V, Beck M | 360.0 GB | 30.2 - 34.2 Å |
| 2025-01-29 |  |
Single particle reconstruction of LGTV with prME from TBEV [32123 multi-frame micrographs composed of 1314 frames each in EER format] | Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Könighofer E, Mirgorodskaya E, Nordén R, Morini F, Rosenbaum W, Růžek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Överby AK [DOI: 10.1101/2024.10.16.618642] |
16.8 TB | 3.22 Å |
| 2025-01-29 |  |
Volume electron microscopy of APEX2-DAB labeled thalamocortical projections in visual cortex L4 [4 reconstructed volumes in TIFF format] | Bosworth AP, Weiser Novak S, Manor U, Allen NJ [DOI: 10.1101/2023.03.02.529949] |
199.8 GB | — |
