Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-11-19 |  |
Structure of the RhGB07 Prefusion, Closed-state trimeric spike protein [7842 multi-frame micrographs composed of 1 frames each in MRC format] | Ni D, Lau K, Ekundayo B [DOI: 10.1101/2025.09.03.673949] |
490.1 GB | 2.97 Å |
| 2025-11-19 |  |
CryoEM data of alpha-synuclein fibril induced by psychosine [1642 multi-frame micrographs composed of 1 frames each in EER format] | Jenkins RA, Sawaya MR, Sun C, Rodriguez JA [Pubmed: 41000844] [DOI: 10.1101/2025.09.12.675751] |
1.0 TB | 2.72 Å |
| 2025-11-19 |  |
CryoEM structure of methylmalonic acid semialdehyde dehydrogenase from Burkholderia cenocepacia at 2.38A resolution [4643 multi-frame micrographs composed of 99 frames each in TIFF format] | Abendroth J, Davies D.R., Yang M., Horanyi P.S., Lorimer D.D., Edwards T.E. | 1.8 TB | 2.38 Å |
| 2025-11-19 |  |
Surface morphometrics reveals local membrane thickness variation in organellar subcompartments [multiple data sets in TIFF and MRC formats] | Medina M, Chang YT, Rahmani H, Fuentes D, Barad BA, Grotjahn DA [Pubmed: 40654968] [DOI: 10.5281/ZENODO.14984805] |
575.4 GB | 12.9 Å |
| 2025-11-18 |  |
RNAP-TopoI complex on bubble scaffold [multiple data sets in TIFF and MRCS formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 1.7 TB | 3.8 - 4.3 Å |
| 2025-11-18 |  |
RNAP-TopoI complex on short-overhang scaffold [multiple data sets in TIFF and MRCS formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 1.5 TB | 3.8 - 4.4 Å |
| 2025-11-18 |  |
Cryo Electron Microscopy of hIAPP A25P, S28P and S29P mutants [multiple data sets in TIFF and EER formats] | Ooi SA, Valli D, Maj M [Pubmed: 40850490] [DOI: 10.1016/j.jmb.2025.169405] |
16.2 TB | 3.0 - 4.07 Å |
| 2025-11-18 |  |
Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex B [3274 multi-frame micrographs composed of 1519 frames each in EER format] | Heberlig GW, La Clair JJ, Burkart MD [Pubmed: 39663458] [DOI: 10.1038/s41586-024-08306-y] |
2.6 TB | 3.23 Å |
| 2025-11-18 |  |
Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex C [4473 multi-frame micrographs composed of 2639 frames each in EER format] | Heberlig GW, La Clair JJ, Burkart MD [Pubmed: 39663458] [DOI: 10.1038/s41586-024-08306-y] |
4.3 TB | 3.31 Å |
| 2025-11-18 |  |
E.coli BAM-hinge (BamA-LVPR) [1851 multi-frame micrographs composed of 32 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
231.0 GB | 4.3 Å |
| 2025-11-18 |  |
E.coli BAM-hinge supressor (BamA-LVPR-T434A) [1505 multi-frame micrographs composed of 35 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
216.4 GB | 4.0 Å |
| 2025-11-18 |  |
E.coli BAM-hinge (BamA-GSGS) [7814 multi-frame micrographs composed of 48 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
1.3 TB | 4.2 Å |
| 2025-11-18 |  |
Human antibody Fab MPV499 bound to hMPV DsCav-ES2 [400 micrographs in MRC format] | Khalil AM, Esfahani BG, Miller RJ, Huang J, Kuan G, Balmaseda A, Gordon A, Mousa JJ [DOI: 10.1101/2025.08.29.673069] |
56.8 GB | 6.57 Å |
| 2025-11-18 |  |
GLIC in MSP1E3D1 nanodisc at pH 7.5 (asolectin) [5188 multi-frame micrographs composed of 40 frames each in MRC format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
1.5 TB | 3.42 Å |
| 2025-11-16 |  |
Single particle cryo-EM dataset of yeast SSU processome assembly intermediates [multiple data sets in TIFF and MRCS formats] | Buzovetsky OB [Pubmed: 41162712] [DOI: 10.1038/s41586-025-09688-3] |
187.0 TB | 2.65 - 5.96 Å |
| 2025-11-14 |  |
Cryo-tomography of 1.4 nm-HAN-594 labeled nucleosomes inside cells (ExoSloNano) [41 tilt series in TIFF format] | Young LN, Sherard A, Narasimhan M, Flaherty WA, Bennett E, Rosen MK, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M | 6.5 GB | — |
| 2025-11-14 |  |
Cryo-tomography of 1.4 nm-HAN-488 labeled ribosomes inside cells (ExoSloNano) [49 tilt series in TIFF format] | Young LN, Sherard A, Bennett E, Rosen MK, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M, Narasimhan M, Flaherty WA | 28.1 GB | — |
| 2025-11-14 |  |
Cryo-tomography of purified1.4 nm-HAN-488 labeled ribosomes from intact cells for validation of labeling method (ExoSloNano) [37 tilt series in TIFF format] | Young LN, Sherard A, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M, Narasimhan M, Flaherty WA, Bennett E, Rosen MK | 168.9 GB | — |
| 2025-11-14 |  |
Cryo-tomography of 5 nm Nanogold labeled ribosomes from intact cells (ExoSloNano) [37 tilt series in TIFF format] | Young LN, Sherard A, Zhou H, Shaikh F, Hutchings J, Riggi M, Narasimhan M, Riggi M, Flaherty WA, Rosen MK, Giraldez AJ, Villa E [DOI: 10.1101/2024.10.12.617288] |
41.6 GB | — |
| 2025-11-13 |  |
Plasmodium berghei ookinete [1170 micrographs in TIFF format] | Henriksson S, Sandblad L, Billker O | 5.0 GB | — |
| 2025-11-13 |  |
Cryo-electron tomography of the MTEC transition zone [multiple data sets in MRC format] | McCafferty CL, van den Hoek H, Müller A, Van der Stappen P, Righetto RD, Stearns T, Engel BD [DOI: 10.1101/2025.06.17.660204] |
1.1 TB | — |
| 2025-11-13 |  |
Cryo-electron microscopy of crosslinked LetAB from Escherichia coli [multiple data sets in TIFF format] | Santarossa CC, Ekiert DC, Bhabha G [Pubmed: 40166208] [DOI: 10.1101/2025.03.21.644421] |
6.8 TB | 2.8 - 3.5 Å |
| 2025-11-13 |  |
CryoEM movies of the IFIT2-IFIT3 heterodimer from Mus musculus [multiple data sets in MRC format] | Cook B, Corbett KD, Daugherty MD, Herzik Jr MA [Pubmed: 39990370] [DOI: 10.1101/2025.02.11.637299] |
497.6 GB | 3.22 Å |
| 2025-11-06 |  |
Human polymerase epsilon bound to PCNA and DNA in the nucleotide bound state [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 39245668] [DOI: 10.1038/s41467-024-52257-x] |
24.6 TB | 2.95 - 5.01 Å |
| 2025-11-06 |  |
SEM images of Mouse brain tissue sample [720 reconstructed volumes in TIFF format] | Slamková D | 6.0 GB | — |
