Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-07-09 |  |
Single particle cryo-EM dataset of Bos taurus mitochondrial complex I (initially solubilised in DDM) proteoliposomes [5538 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba DN, Wright JJ, Fisher W, Yin Z, Hirst J [Pubmed: 38870289] [DOI: 10.1126/science.ado2075] |
1.4 TB | 3.1 - 3.8 Å |
| 2024-07-09 |  |
Cryo-ET tilt series of untreated FIB-milled E. coli ED1a cells [26 tilt series in MRC format] | Khusainov I, Romanov N, Goemans C, Turoňová B, Zimmerli CE, Welsch S, Langer JD, Typas A, Beck M [Pubmed: 38839776] [DOI: 10.1038/s41467-024-49084-5] |
69.6 GB | 5.3 - 7.5 Å |
| 2024-07-09 |  |
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry [954 multi-frame micrographs composed of 2870 frames each in EER format] | Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA [DOI: 10.1101/2024.06.11.598214] |
1.5 TB | 3.2 Å |
| 2024-07-09 |  |
Empty particles of Rhodobacter microvirus Ebor [1099 multi-frame micrographs composed of 2639 frames each in EER format] | Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA [DOI: 10.1101/2024.06.11.598214] |
1.6 TB | 3.3 Å |
| 2024-07-08 |  |
cryo-EM structure of human tRNA(GlyCCC) - PUS4 and PUS7 modified [8211 micrographs in MRC format] | Biela AP, Glatt S | 721.0 GB | 5.34 Å |
| 2024-07-08 |  |
Electron cryomicrographs collected as electron events on a direct electron detector for structure determination at 100 keV [multiple data sets in BIG DATA VIEWER HDF5 and MRC formats] | McMullan G, Naydenova K, Mihaylov D, Yamashita K, Peet MJ, Wilson H, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy MA, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ [Pubmed: 38011573] [DOI: 10.1073/pnas.2312905120] |
999.3 GB | 2.6 - 4.5 Å |
| 2024-07-08 |  |
Particle stack from SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 single particle cryo-EM data [stack of 6020 particles in MRCS format] | Chaves-Sanjuan A, Berlinguer M, Bolognesi M | 758.7 GB | 3.0 - 3.8 Å |
| 2024-07-08 |  |
Particle stack from SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77 single particle cryo-EM data [stack of 3471 particles in MRCS format] | Chaves-Sanjuan A, Berlinguer M, Bolognesi M | 366.7 GB | 3.7 - 4.3 Å |
| 2024-07-08 |  |
Structure of mavacamten-free human cardiac thick filaments within the sarcomere by cryoelectron tomography [multiple data sets in MRC format] | Chen L, Liu J, Rastegarpouyani H, Janssen PML, Pinto JR, Taylor KA [Pubmed: 38386705] [DOI: 10.1073/pnas.2311883121] |
25.6 GB | 16.5 - 26.4 Å |
| 2024-07-07 |  |
Transporter associated with antigen processing (TAP) in the apo state [21556 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Oldham ML, Manon V, Chen J [Pubmed: 38805290] [DOI: 10.1073/pnas.2320879121] |
7.1 TB | 3.6 Å |
| 2024-07-04 |  |
Single-Particle Cryo-EM of Apoferritin at Various Tilts [multiple data sets in TIFF, MRC and MRCS formats] | Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D [Pubmed: 38195598] [DOI: 10.1038/s41467-023-44555-7] |
302.1 GB | 2.2 - 2.5 Å |
| 2024-07-04 |  |
Cryo-EM of Tulane virus Inverted contrast [969 multi-frame micrographs composed of 45 frames each in MRC format] | Sun CS, Jiang WJ [Pubmed: 38254719] [DOI: 10.3390/biom14010119] |
374.9 GB | 3.2 Å |
| 2024-07-04 |  |
Tomograms and the raw 2d tilt series of ER-nuclear envelope junctions of HeLa cells in interphase [multiple data sets in TIFF and MRC formats] | Bragulat-Teixidor H, Otsuka S [Pubmed: 38877171] [DOI: 10.1038/s44319-024-00175-w] |
434.0 GB | — |
| 2024-07-04 |  |
Tomograms and the raw 2d tilt series of ER-nuclear envelope junctions of HeLa cells in early telophase [multiple data sets in TIFF and MRC formats] | Otsuka S [Pubmed: 38877171] [DOI: 10.1038/s44319-024-00175-w] |
334.1 GB | — |
| 2024-07-04 |  |
Tomograms and the raw 2d tilt series of ER-ER junctions of HeLa cells in interphase [multiple data sets in TIFF and MRC formats] | Bragulat-Teixidor H, Otsuka S [Pubmed: 38877171] [DOI: 10.1038/s44319-024-00175-w] |
304.4 GB | — |
| 2024-07-04 |  |
Tomograms and the raw 2d tilt series of ER-ER/nuclear envelope junctions of HeLa cells in late anaphase [multiple data sets in TIFF and MRC formats] | Bragulat-Teixidor H, Otsuka S [Pubmed: 38877171] [DOI: 10.1038/s44319-024-00175-w] |
305.3 GB | — |
| 2024-07-03 |  |
Single particle cryo-EM dataset, collected with a 20 degree tilt, of Bos taurus mitochondrial complex I (originally purified in LMNG) proteoliposomes and deactivated [4550 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba DN, Wright JJ, Fisher W, Yin Z, Hirst J [Pubmed: 38870289] [DOI: 10.1126/science.ado2075] |
959.7 GB | 2.6 - 3.3 Å |
| 2024-07-03 |  |
Cryo-EM structure of human DNA polymerase alpha-primase in pre-initiation stage 2 to 4 and initiation [7014 multi-frame micrographs composed of 45 frames each in TIFF format] | Yin Z [Pubmed: 38335062] [DOI: 10.1111/febs.17082] |
1.7 TB | 3.97 - 6.0 Å |
| 2024-07-03 |  |
Cryo-EM structure of human DNA polymerase alpha-primase at initiation [10677 multi-frame micrographs composed of 40 frames each in TIFF format] | Yin Z [Pubmed: 38335062] [DOI: 10.1111/febs.17082] |
2.4 TB | 4.03 Å |
| 2024-07-03 |  |
Single particle cryo-EM dataset of as-prepared Bos taurus mitochondrial complex I (originally purified in LMNG) proteoliposomes [27014 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba DN, Wright JJ, Fisher W, Yin Z, Hirst J [Pubmed: 38870289] [DOI: 10.1126/science.ado2075] |
5.6 TB | 2.5 - 2.9 Å |
| 2024-07-03 |  |
Automatically collected tilt series on cryoFIB milled lamellae of Baker's Yeast [multiple data sets in TIFF and MRC formats] | Eisenstein F, Fukuda Y, Danev R [DOI: 10.1101/2023.12.14.571776] |
1.2 TB | — |
| 2024-06-27 |  |
Cryo-EM structure of human DNA polymerase alpha-primase in pre-initiation stage 1 [15430 multi-frame micrographs composed of 45 frames each in TIFF format] | Yin Z [Pubmed: 38335062] [DOI: 10.1111/febs.17082] |
3.7 TB | 3.07 Å |
| 2024-06-27 |  |
Single particle cryo-EM dataset of Yarrowia lipolytica mitochondrial complex I [2540 multi-frame micrographs composed of 25 frames each in MRC format] | Grba DN, Hirst J [Pubmed: 32747784] [DOI: 10.1038/s41594-020-0467-8] |
377.9 GB | 2.7 - 3.5 Å |
| 2024-06-27 |  |
Single particle cryo-EM dataset of Yarrowia lipolytica mitochondrial complex I with R121M NDUFS2/NUCM mutation [2241 multi-frame micrographs composed of 40 frames each in MRC format] | Hameedi MA, Grba DN, Richardson KH, Jones AJY, Song W, Roessler MM, Wright JJ, Hirst J [Pubmed: 33640456] [DOI: 10.1016/j.jbc.2021.100474] |
505.6 GB | 3.7 Å |
| 2024-06-27 |  |
Cryo-EM structure of human DNA polymerase alpha-primase at handover [13261 multi-frame micrographs composed of 45 frames each in TIFF format] | Yin Z [Pubmed: 38335062] [DOI: 10.1111/febs.17082] |
3.3 TB | 6.15 Å |
