Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-10-03 |  |
Cryo electron tomography of Cytochalasin D-induced protrusions of Drosophila S2 cells treated with thapsigargin or MG132 [multiple data sets in TIFF and MRC formats] | Ventura Santos C, Carter AP [Pubmed: 37702953] [DOI: 10.15252/embr.202357264] |
107.6 GB | — |
| 2023-10-03 |  |
Single-particle Cryo-EM datasets of hydroxycarboxylic acid receptor signaling complexes [multiple data sets in TIFF format] | Suzuki S, Suzuki H, Fujiyoshi Y [Pubmed: 37736747] [DOI: 10.1038/s41467-023-41650-7] |
4.6 TB | 2.85 - 3.11 Å |
| 2023-10-03 |  |
Adaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging [multiple data sets in TIFF format] | Ezzedine J, Uwizeye C, Si Larbi G, Villain G, Louwagie M, Schilling M, Hagenmuller P, Gallet B, Stewart A, Petroutsos D, Devime F, Salze P, Liger L, Jouhet J, Dumont M, Ravanel S, Amato A, Valay JG, Jouneau PH, Falconet D, Marechal E [DOI: 10.21203/rs.3.rs-3038444/v1] |
104.7 GB | — |
| 2023-10-03 |  |
In situ cryo-electron tomography of E. amylovora cells infected by the jumbo bacteriophage RAY [multiple data sets in TIFF format] | Prichard A, Lee J, Laughlin TG, Lee A, Thomas KP, Sy A, Spencer T, Asavavimol A, Cafferata A, Cameron M, Chiu N, Davydov D, Desai I, Diaz G, Guereca M, Hearst K, Huang L, Jacobs E, Johnson A, Kahn S, Koch R, Martinez A, Norquist M, Pau T, Prasad G, Saam K, Sandhu M, Sarabria AJ, Schumaker S, Sonin S, Sonin A, Uyeno A, Zhao A, Corbett K, Pogliano K, Meyer J, Grose JH, Villa E, Dutton R, Pogliano J [Pubmed: 36865095] [DOI: 10.1101/2023.02.24.529968] |
244.3 GB | 8.9 - 38.0 Å |
| 2023-09-26 |  |
Single particle cryo-EM dataset of human nucleolar and nuclear pre-60S assembly intermediates [multiple data sets in TIFF and MRCS formats] | Vanden Broeck A, Klinge S [Pubmed: 37410842] [DOI: 10.1126/science.adh3892] EMD-29104 EMD-29252 EMD-29105 EMD-29253 EMD-29106 EMD-29254 EMD-29107 EMD-29255 EMD-29108 EMD-29256 EMD-29109 EMD-29257 EMD-29110 EMD-29258 EMD-29111 EMD-29259 EMD-29112 EMD-29260 EMD-29113 EMD-29261 EMD-29114 EMD-29262 EMD-29115 EMD-29263 EMD-29130 EMD-29131 EMD-29132 EMD-29133 EMD-29134 EMD-29135 EMD-29136 EMD-29137 EMD-29138 EMD-29139 EMD-29140 EMD-29141 EMD-29142 EMD-29128 EMD-29129 EMD-29143 EMD-29144 EMD-29145 EMD-29146 EMD-29147 EMD-29148 EMD-29149 EMD-29150 EMD-29151 EMD-29152 EMD-29153 EMD-29154 EMD-29155 EMD-29156 EMD-29157 EMD-29158 EMD-29159 EMD-29160 EMD-29161 EMD-29162 EMD-29163 EMD-29164 EMD-29165 EMD-29166 EMD-29167 EMD-29168 EMD-29169 EMD-29170 EMD-29171 EMD-29173 EMD-29174 EMD-29175 EMD-29176 EMD-29177 EMD-29178 EMD-29179 EMD-29180 EMD-29181 EMD-29182 EMD-29183 EMD-29184 EMD-29185 EMD-29186 EMD-29187 EMD-29188 EMD-29189 EMD-29192 EMD-29194 EMD-29193 EMD-29116 EMD-29265 EMD-29117 EMD-29266 EMD-29118 EMD-29267 EMD-29119 EMD-29268 EMD-29120 EMD-29269 EMD-29121 EMD-29271 EMD-29122 EMD-29272 EMD-29123 EMD-29273 EMD-29124 EMD-29274 EMD-29125 EMD-29275 EMD-29126 EMD-29276 EMD-29127 EMD-29277 EMD-29195 EMD-29196 EMD-29197 EMD-29198 EMD-29199 EMD-29200 EMD-29201 EMD-29202 EMD-29204 EMD-29205 EMD-29206 |
140.5 TB | 2.33 - 3.75 Å |
| 2023-09-25 |  |
The potassium-selective channelrhodopsin HcKCR1 and HcKCR2 in lipid nanodisc [multiple data sets in TIFF format] | Tajima S, Kim YS, Fukuda M, Nakamura S, Yamashita K, Deisseroth K [Pubmed: 37652010] [DOI: 10.1016/j.cell.2023.08.009] |
4.1 TB | 2.53 - 2.66 Å |
| 2023-09-25 |  |
Structural basis of peptidoglycan synthesis by E. coli RodA-PBP2 complex [11120 multi-frame micrographs composed of 50 frames each in TIFF format] | Nygaard R, Graham CLB, Belcher Dufrisne M, Colburn JD, Pepe J, Hydorn MA, Corradi S, Brown CM, Ashraf KU, Vickery ON, Briggs NS, Deering JJ, Kloss B, Botta B, Clarke OB, Columbus L, Dworkin J, Stansfeld PJ, Roper DI, Mancia F [Pubmed: 37620344] [DOI: 10.1038/s41467-023-40483-8] |
2.8 TB | 2.95 - 3.2 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the small dataset of ∆KsgA 30S plus KsgA sample [stack of 588015 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
320.1 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the large dataset of ∆KsgA 30S plus KsgA sample [stack of 1821263 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
991.2 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the ∆KsgA immature 30S sample [stack of 775859 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
422.2 GB | 3.3 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and CsoS2 [20277 multi-frame micrographs composed of 50 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
6.9 TB | 1.86 - 2.52 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and truncated CsoS2 [13151 multi-frame micrographs composed of 40 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
2.2 TB | 2.02 - 3.29 Å |
| 2023-09-22 |  |
Cryo-EM micrographs of RESC1-RESC2 complex bound to gRNA [4420 multi-frame micrographs composed of 60 frames each in TIFF format] | Dolce LG, Nesterenko Y, Walther L, Weis F, Kowalinski E [Pubmed: 36999600] [DOI: 10.1093/nar/gkad217] |
2.5 TB | 4.7 Å |
| 2023-09-22 |  |
Sheared F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] |
7.3 TB | 3.3 Å |
| 2023-09-22 |  |
Short and capped F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] |
7.4 TB | 2.26 - 3.26 Å |
| 2023-09-22 |  |
Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 1) [91457 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
14.5 TB | 2.39 Å |
| 2023-09-22 |  |
In-tissue cryo electron tomography of App^NL-G-F amyloid plaques [23 tilt series in MRC format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1002/pro.3943] |
38.0 GB | 3.0 Å |
| 2023-09-21 |  |
Single-particle cryo-EM dataset of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome [multiple data sets in TIFF and MRCS formats] | Bacic L, Gaullier G, Deindl S [Pubmed: 38307862] [DOI: 10.1038/s41467-024-45237-8] |
8.3 TB | 3.0 Å |
| 2023-09-19 |  |
Spraguea lophii 100S ribosome [multiple data sets in TIFF format] | McLaren MJ, Gil Diez P, Isupov M, Conners R, Gambelli L, Gold V, Connell S, Walter A, Williams B, Daum B [Pubmed: 37709902] [DOI: 10.1038/s41564-023-01469-w] |
9.8 TB | 2.79 Å |
| 2023-09-14 |  |
Porcine uroplakin complex [multiple data sets in TIFF format] | Oda T, Yanagisawa H, Kikkawa M | 1.4 TB | 3.5 Å |
| 2023-09-14 |  |
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans (ALDH) [13797 multi-frame micrographs composed of 40 frames each in TIFF format] | Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O [DOI: 10.1021/acscatal.3c01962] |
3.0 TB | 2.5 Å |
| 2023-09-12 |  |
CryoEM structure determination of actin decorated with smooth muscle heavy meromyosin [1507 multi-frame micrographs composed of 23 frames each in MRC format] | Hojjatian AH, Liu JL, Taylor DWT, Daneshparvar ND, Winkler HW, Ye FY, Fagnant PMF, Trybus KMT, Taylor KAT [Pubmed: 37414375] [DOI: 10.1016/j.jsb.2023.107995] |
4.2 TB | 19.0 Å |
| 2023-09-12 |  |
Single Particle cryoEM dataset of Type I-F CRISPR integration complex from Pseudomonas aeruginosa [9875 multi-frame micrographs composed of 50 frames each in TIFF format] | Santiago-Frangos A, Henriques WS, Wiegand T, Gauvin CC, Buyukyoruk M, Graham AB, Wilkinson RA, Triem L, Neselu K, Eng ET, Lander GC, Wiedenheft B [DOI: 10.1038/s41594-023-01097-2] |
5.7 TB | 3.48 Å |
| 2023-09-11 |  |
Cryo-EM micrographs of RESC1-RESC2 complex [6816 multi-frame micrographs composed of 100 frames each in TIFF format] | Dolce LG, Nesterenko Y, Walther L, Weis F, Kowalinski E [Pubmed: 36999600] [DOI: 10.1093/nar/gkad217] |
1.9 TB | 3.4 Å |
| 2023-09-11 |  |
Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 [12546 multi-frame micrographs composed of 2130 frames each in TIFF format] | Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS [Pubmed: 37640699] [DOI: 10.1038/s41467-023-40955-x] |
11.9 TB | 5.14 Å |
