Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-11-25 |  |
Cryo-EM movies of the Gallus gallus FANCD2-FANCI in complex with dsDNA [19032 multi-frame micrographs composed of 40 frames each in TIFF format] | Alcon P, Kaczmarczyk AP, Ray KK, Liolios T, Guilbaud G, Sijacki T, Shen Y, McLaughlin SH, Sale JE, Knipscheer P, Rueda DS, Passmore LA [Pubmed: 39085614] [DOI: 10.1038/s41586-024-07770-w] |
3.2 TB | 3.68 Å |
| 2024-11-21 |  |
Human platelets in presence of SARS-CoV-2 spike protein [6 reconstructed volumes in MRC format] | Basnet N, Bodakuntla S, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N [Pubmed: 36739444] [DOI: 10.1038/s41467-023-36279-5] |
15.3 GB | — |
| 2024-11-21 |  |
Interleaved scanning electron microscopy: exploring native samples at the mesoscale. E.gracilis [multiple data sets in TIFF and MRC formats] | Dumoux M | 249.7 GB | — |
| 2024-11-21 |  |
Cryo electron tomography of non-infected cos-7 cells [41 reconstructed volumes in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 33.2 GB | 4.7 - 7.1 Å |
| 2024-11-21 |  |
Cryo electron tomography of Echovirus 18-infected cos-7 cells [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T [Pubmed: 30850609] [DOI: 10.1038/s41467-019-09132-x] |
13.1 GB | 3.16 Å |
| 2024-11-21 |  |
Cryo electron tomography of Enterovirus 71-infected cells [49 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 21.1 GB | 4.7 - 7.1 Å |
| 2024-11-21 |  |
Cryo electron tomography of non-infected cos-7 cells with osmicated very low density lipoprotein [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 7.6 GB | 4.7 - 7.1 Å |
| 2024-11-21 |  |
Cryo electron tomography of Echovirus 18-infected cos-7 cells [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T [Pubmed: 30850609] [DOI: 10.1038/s41467-019-09132-x] |
2.6 GB | 3.16 Å |
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 32.8 GB | 4.7 - 7.1 Å |
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor bafilomycin A [41 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 6.3 GB | 4.7 - 7.1 Å |
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor wiskostatin [2 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.9 GB | 4.7 - 7.1 Å |
| 2024-11-21 |  |
Cryo electron tomography of Echovirus 30-infected cos-7 cells [6 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T [Pubmed: 30850609] [DOI: 10.1038/s41467-019-09132-x] |
44.7 GB | 19.4 Å |
| 2024-11-20 |  |
Cryo-EM raw movies of small circular RNAs [3360 multi-frame micrographs composed of 56 frames each in TIFF format] | Kristoffersen EL, McRae EK, Sørensen NR, Holliger P, Andersen ES [DOI: 10.1101/2024.05.14.594117] |
1.3 TB | — |
| 2024-11-20 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.2 GB | 4.7 - 7.1 Å |
| 2024-11-19 |  |
Gallus gallus (chicken) calcium homeostasis modulator 1 (CALHM1) channel [5544 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
1.0 TB | 3.36 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of WT ACTG2 F-actin [526 multi-frame micrographs composed of 36 frames each in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
243.0 GB | 2.45 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of R257C ACTG2 F-actin [1021 multi-frame micrographs composed of 40 frames each in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
470.9 GB | 2.72 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of R40C ACTG2 F-actin [multiple data sets in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
1.9 TB | 2.54 Å |
| 2024-11-19 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [4805 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
479.6 GB | — |
| 2024-11-19 |  |
Training Set for CryoVesNet - Cryo-electron tomograms of rat synaptosomes and synaptic vesicle segmentation [multiple data sets in MRC format] | Khosrozadeh A, Seeger R, Witz G, Radecke J, Sørensen JB, Zuber B [Pubmed: 36876590] [DOI: 10.1101/2022.04.10.487799] |
8.9 GB | — |
| 2024-11-19 |  |
Rubisco data taken with laser-off [126 multi-frame micrographs composed of 50 frames each in TIFF format] | Remis JP | 34.0 GB | 3.1 Å |
| 2024-11-19 |  |
Rubisco data taken with laser-on [126 multi-frame micrographs composed of 50 frames each in TIFF format] | Remis JP | 34.6 GB | 3.1 Å |
| 2024-11-19 |  |
Apoferritin data taken with laser-off [108 multi-frame micrographs composed of 150 frames each in TIFF format] | Remis JP [Pubmed: 39536845] [DOI: 10.1016/j.jsb.2024.108150] |
38.2 GB | 2.6 Å |
| 2024-11-19 |  |
Apoferritin data taken with laser-on [209 multi-frame micrographs composed of 150 frames each in TIFF format] | Remis JP, Remis JP [Pubmed: 39536845] [DOI: 10.1016/j.jsb.2024.108150] |
52.0 GB | 2.7 Å |
| 2024-11-12 |  |
Cryo-EM structure of T. pseudonana PyShell helical tube [5994 multi-frame micrographs composed of 52 frames each in TIFF format] | Kawamoto A, Tohda R, Gerle C, Kurisu G [Pubmed: 39357521] [DOI: 10.1016/j.cell.2024.09.013] |
1.4 TB | 2.4 Å |
