Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) [13536 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
9.4 TB | 2.8 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) [9711 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
6.8 TB | 3.1 Å |
| 2024-04-12 |  |
Structural basis for directional rotation of the Salmonella flagellum [34381 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM | 9.1 TB | 3.4 - 6.7 Å |
| 2024-04-12 |  |
Cryo-electron tomography data of Emiliania huxleyi virus 201 for subtomogram averaging [283 tilt series in TIFF format] | Homola M, Büttner CR, Füzik T, Nováček J, Chaillet M, Förster F, Plevka P [DOI: 10.1101/2023.06.30.547180] |
294.8 GB | 13.0 Å |
| 2024-04-11 |  |
Cryo-EM structure of P-Rex1-IP4 [multiple data sets in MRCS and TIFF formats] | Ravala SK, Adame-Garcia SR, Li S, Chen CL, Cianfrocco MA, Gutkind JS, Cash JN, Tesmer JJG [DOI: 10.7554/eLife.92822.1] |
2.7 TB | 4.1 Å |
| 2024-04-09 |  |
In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [multiple data sets in EER and MRC formats] | Kelley R, Khavnekar S, Zhang X, Obr M, Chakraborty S, Koh AF, Heebner J, Righetto R, Waltz F, McCafferty C, Van den Hoek H, Wietrzynski W, Van Der Stappen P, Michael A, Van Dorst S, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
27.7 TB | — |
| 2024-04-09 |  |
cryo-EM 3D maps of the S. cerevisiae Yta7 bound to ATPgS and histone H3 tail [12138 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 36592926] [DOI: 10.1016/j.jbc.2022.102852] |
6.9 TB | 3.0 - 3.1 Å |
| 2024-04-09 |  |
Structure of the Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304 [29421 multi-frame micrographs composed of 75 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
16.7 TB | 2.18 Å |
| 2024-04-07 |  |
Cryo-EM of BtCoV-HKU5 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
12.9 TB | 5.9 - 8.0 Å |
| 2024-04-07 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
10.8 TB | 7.8 Å |
| 2024-04-03 |  |
Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs [24086 multi-frame micrographs composed of 65 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
11.3 TB | 2.58 Å |
| 2024-04-02 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.8 TB | 7.8 Å |
| 2024-04-02 |  |
Cryo-EM of SARS-CoV-1 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.2 TB | 7.1 Å |
| 2024-04-02 |  |
EMinsight: a tool to capture cryoEM microscope configuration and experimental outcomes for analysis and deposition [2605 multi-frame micrographs composed of 50 frames each in TIFF format] | Morris KL, Harrison PJ, Hatton D, Riggs S, Thiyagalingamc J | 1.2 TB | — |
| 2024-03-26 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein with dC40 deletion [6215 multi-frame micrographs composed of 40 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
5.8 TB | 3.09 - 3.5 Å |
| 2024-03-26 |  |
Cryo electron microscopy of assemblies based on truncated PVY coat protein [2862 multi-frame micrographs composed of 44 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
2.3 TB | 2.93 - 3.62 Å |
| 2024-03-26 |  |
Single particle movie data of NAIP5/Flic complex [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Paidimuddala B, Cao J, Zhang L [Pubmed: 38055825] [DOI: 10.1126/sciadv.adi8539] |
3.1 TB | 2.93 Å |
| 2024-03-26 |  |
Single-Particle Cryo-EM of RNA Polymerase at Various Tilts [multiple data sets in TIFF, MRC and MRCS formats] | Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, McKenna R, Agbandje-McKenna M, Benner SA, Noel JAP, Wang D, Tan YZ, Lyumkis D [Pubmed: 38195598] [DOI: 10.1038/s41467-023-44555-7] |
487.4 GB | 3.1 Å |
| 2024-03-26 |  |
cryo-EM 3D maps of the S. cerevisiae Yta7 bound to the reconstituted nucleosome [16532 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 36592926] [DOI: 10.1016/j.jbc.2022.102852] |
8.4 TB | 10.0 Å |
| 2024-03-26 |  |
Cryo-EM structure of mouse heavy-chain apoferritin [9846 multi-frame micrographs composed of 357 frames each in EER format] | Nazarov S.U., Myasnikov A.G., Mohammed I. | 963.4 GB | 1.09 Å |
| 2024-03-26 |  |
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form [17529 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 37040767] [DOI: 10.1016/j.str.2023.03.010] |
7.6 TB | 3.5 Å |
| 2024-03-26 |  |
Cryo-EM micrographs of engineered encapsulin P3P4 [multiple data sets in MRC and MRCS formats] | Satler T, Jerala R | 69.3 GB | 3.1 Å |
| 2024-03-25 |  |
Cryo-EM micrographs of Tb ADAT2/3 bound to tRNA [6150 multi-frame micrographs composed of 80 frames each in TIFF format] | Dolce LG, Zimmer AA, Tengo L, Weis F, Rubio MAT, Alfonzo JD, Kowalinski E [Pubmed: 36347890] [DOI: 10.1038/s41467-022-34441-z] |
1.8 TB | 3.6 Å |
| 2024-03-25 |  |
Cryo electron microscopy of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans [5466 multi-frame micrographs composed of 43 frames each in EER format] | Flynn AJ, Antonyuk SV, Eady RR, Muench SP, Hasnain SS [Pubmed: 37296134] [DOI: 10.1038/s41467-023-39140-x] |
738.4 GB | 2.2 Å |
| 2024-03-22 |  |
Structural basis for directional rotation of the Salmonella flagellum [39332 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM | 9.0 TB | 3.4 - 6.7 Å |
