EMPIAR-12270 - Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format]

EMPIAR-12270

Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format]

Publication:

Endosome rupture enables enteroviruses to infect cells

Ishemgulova A, Mukhamedova L, Trebichalská Z, Rájecká V, Payne P, Šmerdová L, Moravcová J, Hrebík D, Buchta D, Škubník K, Füzik T, Vaňáčová Š, Nováček J, Plevka P

Communications Biology (---)

Related EMDB entry:

EMD-15710 EMD-15711

Deposited:

2024-09-05

Released:

2024-11-20

Last modified:

2024-11-20

Imageset size:

4.22 GB

Imageset DOI:

10.6019/EMPIAR-12270

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Cryo electron tomography of Rhinovirus 2-infected cells, segmentation

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

Tilt series:
- pixel width and height: 5.532 Å
- Number of tilts: 41
- number of columns, rows: 3838, 3710
- dose-symmetric tilt scheme, ± 50°, 2.5° tilt increment
- rawtlt file available
Tomograms:
- pixel width and height: 16.60 Å (tomo7_full_rec.mrc), 22.13 Å (tomo7_full_rec_crop.mrc), tomo7_full_rec_crop.mrc used for segmentation

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)