EMPIAR-12270 - Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format]

EMPIAR-12270

Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format]

Publication:

Endosome rupture enables enteroviruses to infect cells

Ishemgulova A, Mukhamedova L, Trebichalská Z, Rájecká V, Payne P, Šmerdová L, Moravcová J, Hrebík D, Buchta D, Škubník K, Füzik T, Vaňáčová Š, Nováček J, Plevka P

Communications Biology (---)

Related EMDB entry:

EMD-15710 EMD-15711

Deposited:

2024-09-05

Released:

2024-11-20

Last modified:

2024-11-20

Imageset size:

4.22 GB

Imageset DOI:

10.6019/EMPIAR-12270

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Cryo electron tomography of Rhinovirus 2-infected cells, segmentation

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

Tilt series:
- pixel width and height: 5.532 Å
- Number of tilts: 41
- number of columns, rows: 3838, 3710
- dose-symmetric tilt scheme, ± 50°, 2.5° tilt increment
- rawtlt file available
Tomograms:
- pixel width and height: 16.60 Å (tomo7_full_rec.mrc), 22.13 Å (tomo7_full_rec_crop.mrc), tomo7_full_rec_crop.mrc used for segmentation

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）