Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-03-24 |  |
Array Tomography of Pdzd8 cKO and Fkbp8 KD MEF [multiple data sets in PNG format] | Hirabayashi Y, Nakamura K | 5.9 GB | — |
| 2025-03-19 |  |
Electron tomography of endosymbiotic bacteria inside a bacteriocyte of the cereal weevil Sitophilus oryzae [120 reconstructed volumes in MRC format] | Santarella-Mellwig RSM, Balmand SB, Schwab YS, Zaidman-Remy AZR | 260.8 MB | — |
| 2025-03-17 |  |
Cryo-EM structure of Enoyl-CoA hydratase from Mycobacterium smegmatis [9120 multi-frame micrographs composed of 25 frames each in TIFF format] | Shek R, Quispe J, Staker B, Phan IQ, Barrett LQ, Van Voorhis WC | 1.3 TB | 2.85 Å |
| 2025-03-05 |  |
Cryo-EM micrographs of purified human BIRC6 in presence of HTRA2 [8842 micrographs in MRC format] | Ehrmann JF, Grabarczyk DB, Clausen T [Pubmed: 36758105] [DOI: 10.1126/science.ade8873] |
552.7 GB | 3.3 - 6.2 Å |
| 2025-03-05 |  |
Cryo-EM micrographs of purified human BIRC6 in presence of CASP9 [9289 micrographs in MRC format] | Ehrmann JF, Grabarczyk DB, Clausen T [Pubmed: 36758105] [DOI: 10.1126/science.ade8873] |
580.6 GB | 3.3 Å |
| 2025-03-10 |  |
Cryo-EM micrographs of purified human BIRC6 in presence of MAP1LC3B [7580 micrographs in MRC format] | Ehrmann JF, Grabarczyk DB, Clausen T [Pubmed: 36758105] [DOI: 10.1126/science.ade8873] |
473.8 GB | 3.3 Å |
| 2025-03-10 |  |
Cryo-electron micrographs of Cholinephosphotransferase in complex with diacylglycerol [multiple data sets in TIFF and MRC formats] | Roberts JR [Pubmed: 39747155] [DOI: 10.1038/s41467-024-55673-1] |
1.2 TB | 3.2 Å |
| 2025-03-17 |  |
Cryo electron micrographs of Kaposi’s sarcoma-associated herpesvirus glycoprotein B in post-fusion conformation [14633 multi-frame micrographs composed of 49 frames each in TIFF format] | Ito F, Zhen J, Xie G, Huang H, Silva JC, Wu T-T, Zhou ZH [Pubmed: 39818969] [DOI: 10.1128/jvi.01533-24] |
3.5 TB | 3.3 Å |
| 2025-02-21 |  |
movies for NKCC1 bound with bumetanide [6027 multi-frame micrographs composed of 40 frames each in TIFF format] | Cao E [Pubmed: 39875725] [DOI: 10.1038/s44318-025-00368-6] |
1.5 TB | 2.5 Å |
| 2025-03-19 |  |
Dataset of apoferritin on HexAuFoil grids [multiple data sets in TIFF format] | Weckener M, Naylor CE | 53.4 GB | — |
| 2025-03-20 |  |
Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos [multiple data sets in TIFF format] | Jiang Y, Wang H, Boergens K, Rzepka N, Wang F, Hua Y [DOI: 10.1016/j.crmeth.2025.100989] |
996.4 GB | — |
| 2025-03-17 |  |
Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import [multiple data sets in TIFF and MRC formats] | Chang YT, Barad BA, Rahmani H, Zid BM, Grotjahn DA [Pubmed: 39071314] [DOI: 10.1083/jcb.202407110] |
764.2 GB | 8.0 - 15.0 Å |
| 2025-03-19 |  |
Cryo electron micrographs of 70% DOPG 30%DPPG vesicles [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 285.9 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after extrusion with a 200 nm filter [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 261.9 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after sonication [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 602.1 GB | — |
| 2025-02-10 |  |
Single particle analysis datasets of in vitro grown aSyn filaments [multiple data sets in MRC format] | Sicking K, Al-Azzani M, Outeiro TF, Fernandez-Busnadiego R [Pubmed: 39399048] [DOI: 10.1101/2024.09.23.24313864] |
1023.5 GB | 2.7 Å |
| 2025-01-29 |  |
Volume electron microscopy of APEX2-DAB labeled thalamocortical projections in visual cortex L4 [4 reconstructed volumes in TIFF format] | Bosworth AP, Weiser Novak S, Manor U, Allen NJ [DOI: 10.1101/2023.03.02.529949] |
199.8 GB | — |
| 2025-01-21 |  |
Mouse LRRC8A(BRIL):D in GDN [multiple data sets in TIFF, MRCS and MRC formats] | Lurie A, Brohawn SG [DOI: 10.1101/2024.11.24.625074] |
3.0 TB | 3.3 - 3.4 Å |
| 2025-01-23 |  |
Movies of cagM∆ mutant Cag T4SS from Helicobacter pylori [2877 multi-frame micrographs composed of 60 frames each in TIFF format] | Roberts JR [Pubmed: 38631913] [DOI: 10.26508/lsa.202302560] |
885.9 GB | 8.5 Å |
| 2025-01-27 |  |
Movies of cagT∆ mutant Cag T4SS from Helicobacter pylori [3443 multi-frame micrographs composed of 34 frames each in TIFF format] | Roberts JR [Pubmed: 38631913] [DOI: 10.26508/lsa.202302560] |
741.3 GB | 8.0 Å |
| 2025-02-04 |  |
Structure of the IFN-lambda3/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta [2928 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhang B, Grubbe WS, Mendoza JL, Zhao M [Pubmed: 39827213] [DOI: 10.1038/s41467-025-56119-y] |
1.6 TB | 3.0 Å |
| 2025-02-04 |  |
Microtubule plus end architecture in presence of the ciliary tip module. [34 tilt series in TIFF format] | Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A. | 58.0 GB | — |
| 2025-02-04 |  |
Single particle cryoEM data of Nucleosome core particle containing an 8-oxoG damage site [5135 multi-frame micrographs composed of 50 frames each in TIFF format] | You Q, Feng X, Cai Y, Baylin SB, Li H [Pubmed: 39341999] [DOI: 10.1038/s42003-024-06919-7] |
1.8 TB | 3.3 Å |
| 2025-01-29 |  |
Single particle reconstruction of LGTV with prME from TBEV [32123 multi-frame micrographs composed of 1314 frames each in EER format] | Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Könighofer E, Mirgorodskaya E, Nordén R, Morini F, Rosenbaum W, Růžek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Överby AK [DOI: 10.1101/2024.10.16.618642] |
16.8 TB | 3.22 Å |
| 2025-02-04 |  |
Single particle cryoEM data of Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle [11615 multi-frame micrographs composed of 75 frames each in TIFF format] | You Q, Feng X, Cai Y, Baylin SB, Li H [Pubmed: 39341999] [DOI: 10.1038/s42003-024-06919-7] |
6.6 TB | 3.7 Å |
