EMPIAR-12087 - Cryo-EM micrographs of human RYBP-PRC1 bound to H2Aub1 mononucleosome [10669 micrographs in MRC format]

EMPIAR-12087

Cryo-EM micrographs of human RYBP-PRC1 bound to H2Aub1 mononucleosome [10669 micrographs in MRC format]

Publication:

Structural basis of the histone ubiquitination read-write mechanism of RYBP-PRC1

Ciapponi MC, Karlukova E, Schkölziger S, Benda C, Müller J

Nature structural & molecular biology (2024)

PMID: 38528151

DOI: 10.1038/s41594-024-01258-x

Related EMDB entry:

EMD-17796

Deposited:

2024-05-09

Released:

2024-06-11

Last modified:

2024-06-11

Imageset size:

935.57 GB

Imageset DOI:

10.6019/EMPIAR-12087

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Aligned multi-frame micrographs of human RYBP-PRC1 bound to H2Aub1 nucleosome

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

10669

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

The micrographs are motion-corrected images of 35 raw movie frames (total exposure 54 electron per squared Angstrom). The dataset was collected on streptavidin grids; the streptavidin layer has already been removed from the micrographs deposited here.

Files:

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)