EMPIAR-12156 - Empty particles of Rhodobacter microvirus Ebor [1099 multi-frame micrographs composed of 2639 frames each in EER format]

EMPIAR-12156

Empty particles of Rhodobacter microvirus Ebor [1099 multi-frame micrographs composed of 2639 frames each in EER format]

Publication:

A stargate mechanism ofMicroviridaegenome delivery unveiled by cryogenic electron tomography

Bardy P, MacDonald CI, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NT, Traore DA, König HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PC, Antson AA

bioRxiv (2024)

DOI: 10.1101/2024.06.11.598214

Related EMDB entry:

EMD-50356

Deposited:

2024-06-27

Released:

2024-07-09

Last modified:

2024-07-09

Imageset size:

1.59 TB

Imageset DOI:

10.6019/EMPIAR-12156

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Raw eer images of empty Ebor particle

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

1099

Image size:

(4096, 4096)

Pixel type:

BIT

Pixel spacing:

(1.2, 1.2)

Details:

total dose 50 e/A^2
collected on Falcon 4, Cs=2.7mm, Voltage=200kV
mtf of detector and gain reference are in the data folder

Files:

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

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