Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-10-10 |  |
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae without inhibitors [9027 multi-frame micrographs composed of 59 frames each in TIFF format] | Kishikawa J, Ishikawa M, Masuya T, Murai M, Kitazumi Y, Butler NL, Kato T, Barquera B, Miyoshi H [Pubmed: 35882843] [DOI: 10.1038/s41467-022-31718-1] |
2.5 TB | 3.1 Å |
| 2022-10-10 |  |
Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire [965 multi-frame micrographs composed of 45 frames each in TIFF format] | Strauss M [Pubmed: 31240257] [DOI: 10.1038/s42003-019-0448-9] |
256.6 GB | 3.4 Å |
| 2022-10-07 |  |
Tilt series of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein [6 tilt series in MRC format] | Marcink TC, Porotto M, des Georges A, Moscona A [Pubmed: 35984891] [DOI: 10.1126/sciadv.abo3153] |
9.6 GB | — |
| 2022-10-07 |  |
SARS-CoV-2 S Omicron Spike B.1.1.529 [multiple data sets in MRC and EER formats] | Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D [DOI: 10.1101/2021.12.27.474250] |
8.2 TB | 3.02 Å |
| 2022-10-07 |  |
Endogenous ligand recognition and structural transition of a human PTH receptor. [multiple data sets in TIFF format] | Kobayashi K, Kawakami K, Kusakizako T, Miyauchi H, Tomita A, Kobayashi K, Shihoya W, Yamashita K, Nishizawa T, Kato HE, Inoue A, Nureki O [Pubmed: 35932760] [DOI: 10.1016/j.molcel.2022.07.003] |
3.8 TB | 2.8 - 4.1 Å |
| 2022-10-04 |  |
Particle stack from TRPM8 bound to calcium dataset [multiple data sets in MRC format] | Diver MM, Cheng Y, Julius D [Pubmed: 31488702] [DOI: 10.1126/science.aax6672] |
129.7 GB | 3.2 Å |
| 2022-09-27 |  |
Cryo-EM structure of cyanobacterial PSI in presence of Gallium-substituted ferredoxin (GaFd) [3018 multi-frame micrographs composed of 48 frames each in TIFF format] | Li J, Hamaoka N, Makino F, Kawamoto A, Lin Y, Rögner M, Nowaczyk MM, Lee YH, Namba K, Gerle C, Kurisu G [Pubmed: 36097054] [DOI: 10.1038/s42003-022-03926-4] |
598.2 GB | 1.97 Å |
| 2022-09-26 |  |
In situ cryo-electron tomography of autophagic structures in S. cerevisiae [84 tilt series in MRC format] | Bieber A, Capitanio C, Erdmann PS, Schulman BA, Baumeister W, Wilfling F [Pubmed: 36122245] [DOI: 10.1073/pnas.2209823119] |
249.0 GB | — |
| 2022-09-23 |  |
Structure of pre-60S particle bound to DRG1(AFG2) [multiple data sets in TIFF format] | Prattes M, Grishkovskaya I, Hodirnau VV, Bergler H, Haselbach D [Pubmed: 36097293] [DOI: 10.1038/s41594-022-00832-5] |
3.8 TB | 3.2 - 3.8 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter bound to the native O antigen [4604 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
1.2 TB | 3.2 Å |
| 2022-09-23 |  |
CryoEM structure of the nucleotide-free and open channel A.aeolicus WzmWzt transporter [3048 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
776.8 GB | 4.1 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter bound to 3-O-methyl-D-mannose [3799 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
1.0 TB | 3.7 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter in the presence of the native O antigen and ATP [8625 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
2.2 TB | 3.3 - 3.5 Å |
| 2022-09-23 |  |
Single particle reconstruction of the MAPK p38alpha in complex with its activating MAP2K MKK6 [multiple data sets in TIFF format] | Bowler MW, Juyoux P, Pellegrini E [Pubmed: 37708276] [DOI: 10.1126/science.add7859] |
4.0 TB | 4.0 Å |
| 2022-09-20 |  |
Human amino acid transporter EAAT2 [multiple data sets in TIFF format] | Kato T, Kusakizako T, Yamashita K, Nishizawa T, Nureki O [Pubmed: 35953475] [DOI: 10.1038/s41467-022-32442-6] |
1.5 TB | 3.49 - 3.58 Å |
| 2022-09-20 |  |
Cryo-electron tomography of Cryo-FIB milled dividing E. coli ftsN SPOR domain deletion strain. [60 multi-frame micrographs composed of 4 frames each in MRC format] | Navarro PP, Vettiger A, Ananda VY, Llopis PM, Allolio C, Bernhardt TG, Chao LH [Pubmed: 36097171] [DOI: 10.1038/s41564-022-01210-z] |
189.1 GB | — |
| 2022-09-20 |  |
Cryo-electron tomography of Cryo-FIB milled dividing E. coli ftsL* strain. [60 multi-frame micrographs composed of 4 frames each in MRC format] | Navarro PP, Vettiger A, Ananda VY, Llopis PM, Allolio C, Bernhardt TG, Chao LH [Pubmed: 36097171] [DOI: 10.1038/s41564-022-01210-z] |
67.2 GB | — |
| 2022-09-20 |  |
Cryo-electron tomography of Cryo-FIB milled dividing E. coli envC and/or nlpD deletion strain. [60 multi-frame micrographs composed of 4 frames each in TIFF format] | Navarro PP, Vettiger A, Ananda VY, Llopis PM, Allolio C, Bernhardt TG, Chao LH [Pubmed: 36097171] [DOI: 10.1038/s41564-022-01210-z] |
73.0 GB | — |
| 2022-09-20 |  |
Cryo-electron tomography of Cryo-FIB milled dividing E. coli. [60 multi-frame micrographs composed of 4 frames each in TIFF format] | Navarro PP, Vettiger A, Ananda VY, Llopis PM, Allolio C, Bernhardt TG, Chao LH [Pubmed: 36097171] [DOI: 10.1038/s41564-022-01210-z] |
81.5 GB | — |
| 2022-09-20 |  |
Cryo-EM structure of Cas13bt3–guide RNA–target RNA complex [2772 multi-frame micrographs composed of 48 frames each in TIFF format] | Nakagawa R, Kannan S, Altae-Tran H, Takeda SN, Tomita A, Hirano H, Kusakizako T, Nishizawa T, Yamashita K, Zhang F, Nishimasu H, Nureki O [Pubmed: 36027912] [DOI: 10.1016/j.molcel.2022.08.001] |
616.9 GB | 3.38 Å |
| 2022-09-20 |  |
Single particle cryo-EM of Saccharomyces cerevisiae virus L-BC [unaligned 30-frame TIFFs+mdocs] [10480 multi-frame micrographs composed of 30 frames each in TIFF format] | Grybchuk D, Procházková M, Füzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P [Pubmed: 35986212] [DOI: 10.1038/s42003-022-03793-z] |
1.1 TB | 2.9 - 16.0 Å |
| 2022-09-20 |  |
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution [1664 multi-frame micrographs composed of 62 frames each in TIFF format] | Mori T, Moriya T, Adachi N, Kawasaki M, Senda T, Abe I [Pubmed: 34728636] [DOI: 10.1038/s41467-021-26585-1] |
1.7 TB | 2.54 Å |
| 2022-09-20 |  |
Cryo-EM dataset of Candida albicans CIII, inhibitor free [3634 micrographs in MRC format] | Di Trani J, Rubinstein JL [Pubmed: 34525326] [DOI: 10.1016/j.str.2021.08.006] |
227.1 GB | 3.0 Å |
| 2022-09-13 |  |
Cryo-EM of ADP-F-actin [multiple data sets in TIFF and MRCS formats] | Reynolds MJ, Hachicho C, Carl AG, Gong R, Alushin GM [Pubmed: 36289330] [DOI: 10.1038/s41586-022-05366-w] |
938.5 GB | 2.43 - 3.69 Å |
| 2022-09-13 |  |
Cryo-EM of ADP-Pi-F-actin [multiple data sets in TIFF and MRCS formats] | Reynolds MJ, Hachicho C, Carl AG, Gong R, Alushin GM [Pubmed: 36289330] [DOI: 10.1038/s41586-022-05366-w] |
2.5 TB | 2.51 - 3.71 Å |
