Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-08-06 |  |
Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes [multiple data sets in MRCS, TIFF and MRC formats] | Steimle S, VanEeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F [Pubmed: 33568648] [DOI: 10.1038/s41467-021-21051-4] |
12.4 TB | 3.3 - 7.2 Å |
| 2021-07-30 |  |
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity [8120 multi-frame micrographs composed of 80 frames each in TIFF format] | Gupta TK, Klumpe S, Gries K, Strauss M, Rudack T, Schuller JM, Schroda M, Engel BD [Pubmed: 34166613] [DOI: 10.1016/j.cell.2021.05.011] |
2.0 TB | 3.8 Å |
| 2021-07-30 |  |
Structure of human telomerase holoenzyme with bound telomeric DNA [43639 multi-frame micrographs composed of 48 frames each in TIFF format] | Ghanim GE, Fountain AJ, van Roon AM, Rangan R, Das R, Collins K, Nguyen THD [Pubmed: 33883742] [DOI: 10.1038/s41586-021-03415-4] |
11.2 TB | 3.4 - 6.6 Å |
| 2021-07-29 |  |
The Myosin II Coiled Coil Domain Atomic Structure in its Native Environment [multiple data sets in MRC and MRCS formats] | Rahmani H, Hu Z, Daneshparvar N, Taylor DW, Taylor KT [Pubmed: 33782130] [DOI: 10.1073/pnas.2024151118] |
13.3 TB | 4.25 Å |
| 2021-07-23 |  |
Tilt-series taken from SARS-CoV-2 infected Vero cells. [multiple data sets in MRC format] | Mendonça L, Howe A, Gilchrist JB, Sheng Y, Sun D, Knight ML, Zanetti-Domingues LC, Bateman B, Krebs AS, Chen L, Radecke J, Li VD, Ni T, Kounatidis I, Koronfel MA, Szynkiewicz M, Harkiolaki M, Martin-Fernandez ML, James W, Zhang P [Pubmed: 34330917] [DOI: 10.1038/s41467-021-24887-y] |
52.7 GB | 10.6 - 16.0 Å |
| 2021-07-09 |  |
Cryo-electron tomography of the fungal membrane-assembled retromer:Grd19 coat containing Kex2 cargo motif [multiple data sets in TIFF and MRC formats] | Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ [Pubmed: 33762348] [DOI: 10.1126/sciadv.abf8598] |
347.7 GB | 9.2 - 9.5 Å |
| 2021-07-07 |  |
Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM [multiple data sets in MRC format] | Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N [Pubmed: 34114559] [DOI: 10.7554/eLife.68946] |
11.0 GB | 20.0 Å |
| 2021-07-02 |  |
Affinity-purified RqcH-DR-ribosome-associated quality control complexes from Bacillus subtilis [2510 multi-frame micrographs composed of 30 frames each in TIFF format] | Crowe-McAuliffe C, Takada H, Murina V, Atkinson GC, Wilson DN, Hauryliuk V [Pubmed: 34255840] [DOI: 10.1093/nar/gkab589] |
213.5 GB | 3.2 Å |
| 2021-06-25 |  |
The structure of human CST reveals a decameric assembly bound to telomeric DNA [multiple data sets in TIFF and MRC formats] | Lim C, Barbour AT, Zaug AJ, Goodrich KJ, McKay AE, Wuttke DS, Cech TR [Pubmed: 32499435] [DOI: 10.1126/science.aaz9649] |
14.3 TB | 3.0 Å |
| 2021-06-18 |  |
cryo-FIB and cryo-ET study of ribosome and polysome structures in E. coli [3 tilt series in MRC format] | Xiang YJ, Chang YJ, Liu J, Jacobs-Wagner C [Pubmed: 34186018] [DOI: 10.1016/j.cell.2021.05.037] |
9.7 GB | 20.0 - 27.0 Å |
| 2021-06-18 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 with beam-image shift of 7 um [3125 multi-frame micrographs composed of 59 frames each in TIFF format] | Efremov R, Stroobants A [Pubmed: 33950012] [DOI: 10.1107/S2059798321002151] |
695.6 GB | 1.7 Å |
| 2021-06-18 |  |
Subtomograms of nucleosomes extracted from cryo-tomograms of Drosophila melanogaster embryos [1 subtomograms in EM format] | Harastani M, Eltsov M, Leforestier A, Jonic S [Pubmed: 34095222] [DOI: 10.3389/fmolb.2021.663121] |
666.3 MB | — |
| 2021-06-18 |  |
Bacteriophage PhiKZ non-virion RNA Polymerase [10741 multi-frame micrographs composed of 32 frames each in TIFF format] | de Martin Garrido N, Lai Wan Loong YTE, Aylett CHS [Pubmed: 34181731] [DOI: 10.1093/nar/gkab539] |
3.3 TB | 3.3 Å |
| 2021-06-16 |  |
TSC complex particles [3507 multi-frame micrographs composed of 1 frames each in MRC format] | Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G [Pubmed: 33307091] [DOI: 10.1016/j.jmb.2020.166743] |
13.1 TB | 4.2 Å |
| 2021-06-11 |  |
Cas6-reverse transcriptase-Cas1—Cas2 CRISPR integrase complex [3330 multi-frame micrographs composed of 50 frames each in TIFF format] | Hoel CM, Wang JY, Doudna JA, Brohawn SG [Pubmed: 33958590] [DOI: 10.1038/s41467-021-22900-y] |
2.2 TB | 3.4 - 3.9 Å |
| 2021-06-11 |  |
Single particle cryo EM dataset of SARS-CoV-2 Spike protein with D614G substitution [10051 multi-frame micrographs composed of 32 frames each in MRC format] | Benton DJ, Wrobel AG, Rosenthal PB, Gamblin SJ [Pubmed: 33579792] [DOI: 10.1073/pnas.2022586118] |
4.5 TB | 3.5 - 4.2 Å |
| 2021-06-09 |  |
200kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.65 A [8 diffraction images in SMV format] | Zhou H, Luo F, Luo Z, Li D, Liu C, Li X [Pubmed: 31334636] [DOI: 10.1021/acs.analchem.9b01162] |
9.5 GB | 0.65 Å |
| 2021-06-09 |  |
120kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.60 A [8 diffraction images in SMV format] | Zhou H, Luo F, Luo Z, Li D, Liu C, Li X [Pubmed: 31334636] [DOI: 10.1021/acs.analchem.9b01162] |
9.2 GB | 0.6 Å |
| 2021-06-04 |  |
Cryo-EM of GLP-1 receptor bound to GLP-1 and Gs protein [5739 multi-frame micrographs composed of 75 frames each in TIFF format] | Zhang X, Belousoff MJ, Zhao P, Kooistra AJ, Truong TT, Ang SY, Underwood CR, Egebjerg T, Šenel P, Stewart GD, Liang YL, Glukhova A, Venugopal H, Christopoulos A, Furness SGB, Miller LJ, Reedtz-Runge S, Langmead CJ, Gloriam DE, Danev R, Sexton PM, Wootten D [Pubmed: 33027691] [DOI: 10.1016/j.molcel.2020.09.020] |
1.9 TB | 2.1 Å |
| 2021-06-04 |  |
Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance [stack of 6649 particles in MRC format] | Keshavan P, Banavali NK [Pubmed: 34127662] [DOI: 10.1038/s41467-021-23726-4] |
2.3 TB | 3.15 - 3.49 Å |
| 2021-06-04 |  |
Bacteriophage PhiKZ non-virion RNA Polymerase [8765 micrographs in MRC format] | de Martin Garrido N, Lai Wan Loong YTE, Aylett CHS [Pubmed: 34181731] [DOI: 10.1093/nar/gkab539] |
769.6 GB | 3.3 Å |
| 2021-06-04 |  |
Cryo-EM structure of human rod CNGA1 channel in apo-state [stack of 274333 particles in MRCS format] | Xue J, Han Y, Zeng W, Wang Y, Jiang Y [Pubmed: 33651975] [DOI: 10.1016/j.neuron.2021.02.007] |
84.9 GB | 2.6 Å |
| 2021-06-04 |  |
Cryo-EM structure of SARS-CoV-2 spike at pH 4.0 [10326 multi-frame micrographs composed of 40 frames each in TIFF format] | Tsybovsky Y, Zhou T [Pubmed: 33271067] [DOI: 10.1016/j.chom.2020.11.004] |
1.9 TB | 2.4 Å |
| 2021-05-28 |  |
CLEM/FIB-SEM Imaging of T Cells after the Formation of Signaling Microclusters at the Immunological Synapse [160 micrographs in TIFF format] | Narayan K | 26.6 MB | — |
| 2021-05-26 |  |
CryoEM single particle analysis of 65 kDa human haemoglobin using a 200 kV Talos Arctica [1416 multi-frame micrographs composed of 70 frames each in TIFF format] | Mann D, Sachse C | 1.5 TB | 3.04 Å |
