Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-01-18 |  |
Single-particle cryoEM data of yeast Ubr1-Ubc2-Ub-N-degron complex (initiation) [10932 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
5.7 TB | 3.35 Å |
| 2022-01-18 |  |
Single-particle cryoEM data of a ternary KRas(G13D)-SOS complex [6295 multi-frame micrographs composed of 50 frames each in TIFF format] | Liu C, Zhao M [Pubmed: 33723061] [DOI: 10.1073/pnas.2022403118] |
3.7 TB | 3.47 Å |
| 2022-01-18 |  |
Single-particle cryoEM data of yeast Ubr1 (apo) [5912 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
3.2 TB | 7.69 Å |
| 2022-01-17 |  |
CryoEM of Mycobacterium tuberculosis WT RNAP holoenzyme/RbpA bound to an inhibitor corallopyronin and us-fork DNA [multiple data sets in TIFF format] | Boyaci H, Chen J, Darst SA, Campbell EA [Pubmed: 30626968] [DOI: 10.1038/s41586-018-0840-5] |
2.3 TB | 3.55 Å |
| 2022-01-14 |  |
High resolution 3D imaging of liver subcellular architecture and its link to metabolic function [multiple data sets in TIFF format] | Parlakgul G, Hotamisligil GS [Pubmed: 35264794] [DOI: 10.1038/s41586-022-04488-5] |
2.1 TB | — |
| 2022-01-14 |  |
Motion corrected micrographs - purified SINV/EEEV particles and recombinant anti-EEEV Fab (EEEV-143) [3535 micrographs in MRC format] | Williamson LE, Gilliland T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe JE [Pubmed: 33301709] [DOI: 10.1016/j.cell.2020.11.011] |
187.5 GB | 8.3 Å |
| 2022-01-12 |  |
Raw movies and final particle stack for a dataset of bL17-limited E. coli ribosome assembly intermediates. [multiple data sets in MRCS and MRC formats] | Rabuck-Gibbons JN, Lyumkis D, Williamson JR [Pubmed: 34990602] [DOI: 10.1016/j.str.2021.12.005] EMD-24491 EMD-24492 EMD-24499 EMD-24508 EMD-24509 EMD-24510 EMD-24515 EMD-24517 EMD-24543 EMD-24520 EMD-24521 EMD-24527 EMD-24538 EMD-24539 EMD-24546 EMD-24550 EMD-24555 EMD-24558 EMD-24559 EMD-24561 EMD-24562 EMD-24563 EMD-24564 EMD-24565 EMD-24567 EMD-24568 EMD-24571 EMD-24573 EMD-24574 EMD-24626 EMD-24627 EMD-24631 EMD-24633 EMD-24634 EMD-24658 EMD-24659 EMD-24660 EMD-24661 EMD-24662 EMD-24669 EMD-24671 EMD-24673 |
1.3 TB | 4.5 - 13.6 Å |
| 2022-01-12 |  |
Cryo-FIB-SEM volume in a Sum159 human cell line [20 micrographs in TIFF format] | Klumpe S, Fung HKH, Goetz SK, Zagoriy I, Hampoelz B, Zhang X, Erdmann PS, Baumbach J, Müller CW, Beck M, Plitzko JM, Mahamid J [Pubmed: 34951584] [DOI: 10.7554/elife.70506] |
120.1 MB | — |
| 2022-01-12 |  |
In vivo architecture of the polar organizing protein Z (PopZ) meshwork in the Alphaproteobacteria Magnetospirillum gryphiswaldense and Caulobacter crescentus [multiple data sets in MRC format] | Toro-Nahuelpan M, Plitzko JM, Schüler D, Pfeiffer D [Pubmed: 34971672] [DOI: 10.1016/j.jmb.2021.167423] |
6.4 GB | — |
| 2022-01-12 |  |
CryoEM of Mycobacterium tuberculosis WT RNAP holoenzyme/RbpA/Fdx [401 multi-frame micrographs composed of 50 frames each in TIFF format] | Boyaci H, Chen J, Darst SA, Campbell EA [Pubmed: 29480804] [DOI: 10.7554/eLife.34823] |
220.5 GB | 3.38 Å |
| 2022-01-12 |  |
Motion corrected micrographs - purified SINV/EEEV particles and recombinant anti-EEEV Fab (EEEV-33) [2111 micrographs in MRC format] | Williamson LE, Gilliland Jr T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe Jr JE [Pubmed: 33301709] [DOI: 10.1016/j.cell.2020.11.011] |
111.8 GB | 7.24 Å |
| 2022-01-12 |  |
Motion corrected micrographs - purified Dot/Icm T4SS particles [3590 micrographs in MRC format] | Durie CL, Sheedlo MJ, Chung JM, Byrne BG, Su M, Knight T, Swanson M, Lacy DB, Ohi MD [Pubmed: 32876045] [DOI: 10.7554/eLife.59530] |
190.4 GB | 3.7 Å |
| 2022-01-12 |  |
CryoEM of Mycobacterium tuberculosis WT RNAP holoenzyme/RbpA [1381 multi-frame micrographs composed of 50 frames each in TIFF format] | Boyaci H, Chen J, Darst SA, Campbell EA [Pubmed: 29480804] [DOI: 10.7554/eLife.34823] |
838.9 GB | 3.38 Å |
| 2022-01-12 |  |
Cryo-electron tilt series of mouse stereocilia [552 tilt series in MRC format] | Elferich J, Clark S, Ge J, Goehring A, Matsui A, Gouaux E [Pubmed: 34964715] [DOI: 10.7554/eLife.74512] |
1.9 TB | — |
| 2022-01-12 |  |
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 16 weeks after induction [696 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [Pubmed: 35246535] [DOI: 10.1038/s41467-022-28720-y] |
15.9 GB | — |
| 2022-01-12 |  |
FIB-SEM of an Mbp-deficient shiverer mouse optic nerve [857 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [Pubmed: 35246535] [DOI: 10.1038/s41467-022-28720-y] |
18.8 GB | — |
| 2022-01-12 |  |
FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 26 weeks after induction [747 micrographs in TIFF format] | Meschkat M, Steyer AM, Ruhwedel T, Möbius W [DOI: 10.1101/2020.09.02.279612] |
21.5 GB | — |
| 2022-01-11 |  |
Cryo-FIB-SEM data on Chlamydomonas reinhardtii cells [37 micrographs in TIFF format] | Klumpe S [Pubmed: 34951584] [DOI: 10.7554/elife.70506] |
888.2 MB | — |
| 2022-01-10 |  |
Proton-powered peptide transporter SbmA in lipid nanodisc [7306 multi-frame micrographs composed of 40 frames each in TIFF format] | Ghilarov D, Inaba-Inoue S, Stepien P, Qu F, Michalczyk E, Pakosz Z, Nomura N, Ogasawara S, Walker GC, Rebuffat S, Iwata S, Heddle JG, Beis K [Pubmed: 34516884] [DOI: 10.1126/sciadv.abj5363] |
2.7 TB | 3.9 Å |
| 2022-01-07 |  |
Cryo-electron tomography of rod outer segments in ABCA4 knockout mice acquired with Volta phase plate in focus [2 reconstructed volumes in MRC format] | Poege M, Mahamid J, Imanishi SS, Plitzko JM, Palczewski K, Baumeister W [Pubmed: 34931611] [DOI: 10.7554/eLife.72817] |
3.0 GB | 29.1 Å |
| 2022-01-07 |  |
Cryo-electron tomography of rod outer segments in wild type mice acquired with Volta Phase Plate in focus [2 reconstructed volumes in MRC format] | Poege M, Mahamid J, Imanishi SS, Plitzko JM, Palczewski K, Baumeister W [Pubmed: 34931611] [DOI: 10.7554/eLife.72817] |
3.0 GB | 24.3 Å |
| 2022-01-07 |  |
Cryo-electron tomography of rod outer segments in wild type mice acquired conventionally with defocus [2 reconstructed volumes in MRC format] | Poege M, Mahamid J, Imanishi SS, Plitzko JM, Palczewski K, Baumeister W [Pubmed: 34931611] [DOI: 10.7554/eLife.72817] |
4.1 GB | 19.3 Å |
| 2021-12-23 |  |
cryoEM structure of Gq-coupled MRGPRX4 with small molecule agonist MS47134 [4506 multi-frame micrographs composed of 60 frames each in TIFF format] | Cao C, Fay J, Roth B [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
1.3 TB | 2.6 Å |
| 2021-12-23 |  |
cryoEM structure of Gq-coupled MRGPRX2 with peptide agonist Cortistatin-14 [12299 multi-frame micrographs composed of 60 frames each in TIFF format] | Cao C, Fay J, Roth B [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
3.6 TB | 2.45 Å |
| 2021-12-23 |  |
cryoEM structure of Gq-coupled MRGPRX2 with small molecule agonist (R)-Zinc-3573 [5359 multi-frame micrographs composed of 60 frames each in TIFF format] | Cao C, Fay J, Roth B [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
1.6 TB | 2.9 Å |
