Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2015-10-09 |  |
GroEL dataset - NRAMM (06jul12a) [186 micrographs in MRC format] | Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS [Pubmed: 16762565] [DOI: 10.1016/j.jsb.2006.04.005] |
7.0 GB | 7.8 Å |
| 2015-10-09 |  |
Cryo-electron tomography and subtomogram averaging of Rous-Sarcoma-Virus deltaMBD virus-like particles [1 class averages in MRC format] | Schur FKM, Dick RA, Hagen WJH, Vogt VM, Briggs JAG [Pubmed: 26223638] [DOI: 10.1128/JVI.01502-15] |
248.1 MB | — |
| 2015-10-01 |  |
Tubulin Chaperone complexes TBC-DEG Q73L: alpha beta-tubulin:TBCC complex [stack of 16801 particles in MRC format] | Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J [Pubmed: 26208336] [DOI: 10.7554/eLife.08811] |
1.0 GB | 24.0 Å |
| 2015-10-01 |  |
Tubulin Chaperone complexes TBC-DEG Q73L: alpha beta-tubulin complex [stack of 18361 particles in MRC format] | Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J [Pubmed: 26208336] [DOI: 10.7554/eLife.08811] |
1.1 GB | 24.0 Å |
| 2015-09-01 |  |
New movie data for MAVS CARD C1 filaments [512 multi-frame micrographs composed of 16 frames each in MRC format] | Chew PL, Ng TS, Lok SM, Xu H, He X, Zheng H, Huang LJ, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX [Pubmed: 26314863] [DOI: 10.7554/eLife.07546] |
512.1 GB | 4.2 Å |
| 2015-08-28 |  |
Cryo electron microscopy of YnaI [multiple data sets in MRC format] | Bottcher B, Prazak V, Rasmussen A, Black SS, Rasmussen T [Pubmed: 26256535] [DOI: 10.1016/j.str.2015.06.023] |
107.6 GB | 12.6 Å |
| 2015-08-12 |  |
Cryo-EM micrographs of microtubules in GDP-state obtained by copolymerization with EB3 [multiple data sets in MRC format] | Zhang R, Alushin GM, Brown A, Nogales E [Pubmed: 26234155] [DOI: 10.1016/j.cell.2015.07.012] |
426.0 GB | 3.4 Å |
| 2015-06-18 |  |
A simulated cryoEM data set of GroEL particles [stack of 10000 particles in MRC format] | Deng Y, Sun F | 1.5 GB | — |
| 2015-06-17 |  |
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine [multiple data sets in MRC format] | Wong W, Bai XC, Brown A, Fernandez IS, Hanssen E, Condron M, Tan YH, Baum J, Scheres SHW [Pubmed: 24913268] [DOI: 10.7554/eLife.03080] |
1.2 TB | 3.2 Å |
| 2015-06-04 |  |
Raw data for the 3D structure of horse spleen apoferritin determined by electron cryomicroscopy [multiple data sets in MRC format] | Russo CJ, Passmore LA [Pubmed: 25504723] [DOI: 10.1126/science.1259530] |
180.0 GB | 4.7 Å |
| 2015-04-30 |  |
Human TRPA1 ion channel with agonist AITC [stack of 43585 particles in MRC format] | Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D [Pubmed: 25855297] [DOI: 10.1038/nature14367] |
453.0 GB | 4.24 Å |
| 2015-04-24 |  |
Sub-tomogram average of a mammalian F-type ATP synthase monomer [multiple data sets in DM4 format] | Jiko C, Davies KM, Shinzawa-Itoh K, Tani K, Maeda S, Mills DJ, Tsukihara T, Fujiyoshi Y, Kuehlbrandt W, Gerle C [Pubmed: 25815585] [DOI: 10.7554/eLife.06119] |
8.9 GB | 24.0 Å |
| 2015-03-06 |  |
T20S Proteasome at 2.8 Å Resolution [multiple data sets in MRC format] | Campbell M, Veesler D, Cheng A, Potter CS, Carragher B [Pubmed: 25760083] [DOI: 10.7554/eLife.06380] |
2.0 TB | 2.8 Å |
| 2015-02-26 |  |
VipA/VipB, sheath of the bacterial type IV secretion system, micrographs for helical reconstruction taken on a K2 detector [77 micrographs in MRC format] | Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, DiMaio F, Baker D, Stahlberg H, Egelman EH, Basler M [Pubmed: 25723169] [DOI: 10.1016/j.cell.2015.01.037] |
4.1 GB | 3.5 Å |
| 2015-02-23 |  |
Electron cryo-microscopy of ATP synthase dimers from Polytomella sp. [2829 multi-frame micrographs composed of 24 frames each in MRC format] | Allegretti M, Klusch N, Mills DJ, Vonck J, Kuehlbrandt W, Davies KM [Pubmed: 25707805] [DOI: 10.1038/nature14185] |
4.1 TB | 7.0 Å |
| 2015-01-16 |  |
Tobacco Mosaic Virus K2 Summit dataset including manually boxed helix coordinates [14 multi-frame micrographs composed of 22 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
15.7 GB | 4.0 Å |
| 2015-01-16 |  |
Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [28 multi-frame micrographs composed of 16 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
28.0 GB | 3.7 Å |
| 2015-01-16 |  |
Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [109 multi-frame micrographs composed of 7 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
47.7 GB | 3.35 - 4.2 Å |
| 2014-11-19 |  |
Beta-galactosidase Falcon-II micrographs plus manually selected coordinates by Richard Henderson [84 micrographs in MRC format] | Scheres SH [Pubmed: 25486611] [DOI: 10.1016/j.jsb.2014.11.010] |
5.3 GB | 4.2 Å |
| 2014-11-06 |  |
Yeast 80S Ribosome-Taura Syndrome Virus IRES complex, Frealign Input Particle Stack [stack of 416312 particles in MRC format] | Koh CS, Brilot AF, Grigorieff N, Korostelev AA [Pubmed: 24927574] [DOI: 10.1073/pnas.1406335111] |
273.6 GB | 6.1 Å |
| 2014-11-06 |  |
Yeast 80S Ribosome - tRNA- Kozak mRNA complexes, Frealign Input Particle Stack [stack of 86866 particles in MRC format] | Svidritskiy E, Brilot AF, Koh CS, Grigorieff N, Korostelev AA [Pubmed: 25043550] [DOI: 10.1016/j.str.2014.06.003] |
42.0 GB | 6.2 - 6.3 Å |
| 2014-09-17 |  |
MAVS CARD and DeltaProTM filaments [multiple data sets in TIFF, MRC and IMAGIC formats] | Xu H, He X, Zheng H, Huang L, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX [Pubmed: 24569476] [DOI: 10.7554/eLife.01489] |
35.3 GB | 9.6 - 16.4 Å |
| 2014-09-09 |  |
Full virus map of Brome Mosaic Virus (picked particles) [stack of 35142 particles in IMAGIC format] | Wang Z, Hryc C, Bammes B, Afonine P, Jakana J, Chen DH, Liu XA, Baker M, Kao C, Ludtke S, Schmid M, Adams P, Chiu W [Pubmed: 25185801] [DOI: 10.1038/ncomms5808] |
23.1 GB | 3.8 Å |
| 2014-09-07 |  |
Full virus map of Brome Mosaic Virus (micrographs and particle coordinates) [multiple data sets in TIFF and MRC formats] | Wang Z, Hryc C, Bammes B, Afonine P, Jakana J, Chen DH, Liu XA, Baker M, Kao C, Ludtke S, Schmid M, Adams P, Chiu W [Pubmed: 25185801] [DOI: 10.1038/ncomms5808] |
1.7 TB | 3.8 Å |
| 2014-08-07 |  |
Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy (frame-averaged micrographs) [509 micrographs in MRC format] | Bartesaghi A, Matthies D, Banerjee S, Merk A, Subramaniam S [Pubmed: 25071206] [DOI: 10.1073/pnas.1402809111] |
108.0 GB | 3.2 Å |
