Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-03-20 |  |
Cryo-electron tomography of the yeast NPC [120 micrographs in MRC format] | Nudelman I, Fernandez-Martinez J, Rout MP, Ludtke SJ, Akey CW [Pubmed: 29539637] [DOI: 10.1038/nature26003] |
127.1 GB | 28.0 Å |
| 2018-03-09 |  |
Apoferritin tutorial dataset for cisTEM [20 multi-frame micrographs composed of 50 frames each in MRC format] | Grant T, Rohou A, Grigorieff N [Pubmed: 29513216] [DOI: 10.7554/elife.35383] |
5.5 GB | — |
| 2018-02-26 |  |
Cryo-EM reconstruction of a modified human Adenovirus C5 [231 multi-frame micrographs composed of 50 frames each in MRC format] | Schmid M, Ernst P, Honegger A, Suomalainen M, Zimmermann M, Braun L, Stauffer S, Thom C, Dreier B, Eibauer M, Kipar A, Vogel V, Greber UF, Medalia O, Plückthun A [Pubmed: 29386504] [DOI: 10.1038/s41467-017-02707-6] |
612.7 GB | 7.4 Å |
| 2018-02-08 |  |
Tilt-series of salmonella enterica wild-type bacterial flagellar motor [1 tilt series in MRC format] | Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR [Pubmed: 26976588] [DOI: 10.1073/pnas.1518952113] |
328.0 MB | 69.4 Å |
| 2018-02-07 |  |
Raw 2d tomographic tilt series of a dividing cell [65 tilt series in ST format] | Otsuka S [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
237.8 GB | — |
| 2018-01-31 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [219 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
45.9 GB | 4.6 Å |
| 2018-01-26 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [435 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
89.4 GB | 4.4 Å |
| 2018-01-25 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [318 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
64.0 GB | 3.9 Å |
| 2018-01-24 |  |
Tilt-series of e. coli carrying empty ple6 plasmid induced with 20 uM IPTG [4 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
3.8 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB hyper-overexpressed by induction with 1uM IPTG [5 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
5.0 GB | — |
| 2018-01-22 |  |
Cryo-EM structure of the TMEM16A in Nanodisc [stack of 3149 particles in MRCS format] | Dang S, Cheng Y [Pubmed: 29236684] [DOI: 10.1038/nature25024] |
226.7 GB | 3.8 Å |
| 2018-01-22 |  |
Cryo-EM structure of the TMEM16A in LMNG [multiple data sets in MRCS format] | Dang S, Cheng Y [Pubmed: 29236684] [DOI: 10.1038/nature25024] |
244.2 GB | 3.8 Å |
| 2018-01-22 |  |
Human TRPM4 ion channel in a lipid nanodisc in a calcium-free state [stack of 45247 particles in MRCS format] | Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y [Pubmed: 29217581] [DOI: 10.1126/science.aar4510] |
162.5 GB | 3.2 Å |
| 2018-01-22 |  |
Human TRPM4 ion channel in a lipid nanodisc in a calcium-bound state [stack of 221100 particles in MRCS format] | Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y [Pubmed: 29217581] [DOI: 10.1126/science.aar4510] |
84.4 GB | 3.1 Å |
| 2018-01-17 |  |
Serial Block Face Scanning Electron Micrscopy dataset of fetal day 64 guinea pig psoas muscle in transverse [93 micrographs in TIFF format] | Cocks ET [DOI: 10.1111/jmi.12676] |
264.4 MB | — |
| 2018-01-17 |  |
Serial Block Face Scanning Electron Micrscopy dataset of the optic lobe from an adult locust [100 micrographs in TIFF format] | Cocks ET [DOI: 10.1111/jmi.12676] |
3.4 GB | — |
| 2018-01-03 |  |
Structure of the Z-disk isolated from the indirect flight muscle of the honey bee [96 class averages in MRC format] | Rusu M, Hu Z, Taylor KA, Trinick J [Pubmed: 28733815] [DOI: 10.1007/s10974-017-9477-5] |
3.0 GB | 60.0 Å |
| 2018-01-03 |  |
3D reconstruction of the tubular system of preterm G55/57, mid term G58/60 and term G66/68 of guinea pig left ventricles [318 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 2.9 GB | — |
| 2018-01-03 |  |
3D reconstruction of the cardiac mitochondria in Neaonate and Adult GP cardiomyocyte [262 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.2 GB | — |
| 2018-01-03 |  |
3D reconstruction of cardiac mitochondria in earlly prenatal (G55/57) and mid term(G58/60) and term (G66/68) GP cardiomyocyte [341 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.7 GB | — |
| 2018-01-03 |  |
Segment /nodes network analysis of the tubular system of the Neonate and Adult GP cardiomyocyte [167 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 787.5 MB | — |
| 2018-01-03 |  |
Segment /nodes network analysis of the tubular system of the prenatal stages of GP cardiomyocyte [254 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 1.9 GB | — |
| 2017-12-18 |  |
CryoET of hemagglutinin single particle with spot-to-plunge time of 800ms [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
34.0 GB | — |
| 2017-12-18 |  |
CryoET of apoferritin single particle [multiple data sets in MRC format] | Noble AJ, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
46.1 GB | — |
