EMPIAR-10473
Micrograph frames from 110 internal SEMC/NYSBC test datasets used for Topaz-Denoise model generation & analysis [1000000 micrographs in MRCS format]
Publication:

Topaz-Denoise: general deep denoising models for cryoEM and cryoET

Bepler T, Kelley K, Noble AJ, Berger B

Nature communications 11 (2020)

PMID: 33060581

Deposited:
2019-06-18
Released:
2020-11-27
Last modified:
2021-09-07
Imageset size:
33.93 TB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • micrographs - single frame
1. Unaligned micrograph frames from 110 internal SEMC/NYSBC test datasets
Category:
micrographs - single frame
Image format:
MRCS
No. of images or tilt series:
1000000
Image size:
(None, None)
Pixel type:
UNSIGNED 16 BIT INTEGER
Pixel spacing:
(None, None)
Details:
Here are micrograph frames for 110 internal SEMC/NYSBC datasets that we used to generate and analyze numerous different denoising models when writing the Topaz-Denoise software and manuscript. Many of these datasets were used in the pre-trained denoising models included in Topaz. Some frames are in mrcs format, some are in tiff format, and some are zipped with bzip2.

In this EMPIAR entry, you will find an Excel (.xlsx) with sample information, pixelsize, microscope information, and total dose for each dataset.
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