The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2015-02-23 | Electron cryo-microscopy of ATP synthase dimers from Polytomella sp. [2829 multi-frame micrographs composed of 24 frames each in MRC format] | Allegretti M, Klusch N, Mills DJ, Vonck J, Kuehlbrandt W, Davies KM [Pubmed: 25707805] [DOI: 10.1038/nature14185] |
4.1 TB | 7.0 Å | |
2015-01-16 | Tobacco Mosaic Virus K2 Summit dataset including manually boxed helix coordinates [14 multi-frame micrographs composed of 22 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
15.7 GB | 4.0 Å | |
2015-01-16 | Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [28 multi-frame micrographs composed of 16 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
28.0 GB | 3.7 Å | |
2015-01-16 | Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [109 multi-frame micrographs composed of 7 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
47.7 GB | 3.35 - 4.2 Å | |
2014-11-19 | Beta-galactosidase Falcon-II micrographs plus manually selected coordinates by Richard Henderson [84 micrographs in MRC format] | Scheres SH [Pubmed: 25486611] [DOI: 10.1016/j.jsb.2014.11.010] |
5.3 GB | 4.2 Å | |
2014-11-06 | Yeast 80S Ribosome-Taura Syndrome Virus IRES complex, Frealign Input Particle Stack [stack of 416312 particles in MRC format] | Koh CS, Brilot AF, Grigorieff N, Korostelev AA [Pubmed: 24927574] [DOI: 10.1073/pnas.1406335111] |
273.6 GB | 6.1 Å | |
2014-11-06 | Yeast 80S Ribosome - tRNA- Kozak mRNA complexes, Frealign Input Particle Stack [stack of 86866 particles in MRC format] | Svidritskiy E, Brilot AF, Koh CS, Grigorieff N, Korostelev AA [Pubmed: 25043550] [DOI: 10.1016/j.str.2014.06.003] |
42.0 GB | 6.2 - 6.3 Å | |
2014-09-17 | MAVS CARD and DeltaProTM filaments [multiple data sets in TIFF, MRC and IMAGIC formats] | Xu H, He X, Zheng H, Huang L, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX [Pubmed: 24569476] [DOI: 10.7554/eLife.01489] |
35.3 GB | 9.6 - 16.4 Å | |
2014-09-09 | Full virus map of Brome Mosaic Virus (picked particles) [stack of 35142 particles in IMAGIC format] | Wang Z, Hryc C, Bammes B, Afonine P, Jakana J, Chen DH, Liu XA, Baker M, Kao C, Ludtke S, Schmid M, Adams P, Chiu W [Pubmed: 25185801] [DOI: 10.1038/ncomms5808] |
23.1 GB | 3.8 Å | |
2014-09-07 | Full virus map of Brome Mosaic Virus (micrographs and particle coordinates) [multiple data sets in TIFF and MRC formats] | Wang Z, Hryc C, Bammes B, Afonine P, Jakana J, Chen DH, Liu XA, Baker M, Kao C, Ludtke S, Schmid M, Adams P, Chiu W [Pubmed: 25185801] [DOI: 10.1038/ncomms5808] |
1.7 TB | 3.8 Å | |
2014-08-07 | Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy (frame-averaged micrographs) [509 micrographs in MRC format] | Bartesaghi A, Matthies D, Banerjee S, Merk A, Subramaniam S [Pubmed: 25071206] [DOI: 10.1073/pnas.1402809111] |
108.0 GB | 3.2 Å | |
2014-08-07 | Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy [multiple data sets in MRC and DM4 formats] | Bartesaghi A, Matthies D, Banerjee S, Merk A, Subramaniam S [Pubmed: 25071206] [DOI: 10.1073/pnas.1402809111] |
442.5 GB | 3.2 Å | |
2014-06-19 | Cryo-electron tomography average of an C1-IgG complex [27 class averages in MRC format] | Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI [Pubmed: 24626930] [DOI: 10.1126/science.1248943] |
10.8 GB | 66.0 Å | |
2014-02-21 | Low-contrast particle stack for HIV-1 Env gp160 precursor (Spider stack) [stack of 670023 particles in SPIDER format] | Mao Y, Wang L, Gu C, Herschhorn A, Desormeaux A, Finzi A, Xiang SH, Sodroski JG [Pubmed: 23757493] [DOI: 10.1073/pnas.1307382110] |
164.2 GB | 6.0 Å | |
2014-02-21 | Low-contrast particle stack for HIV-1 Env gp160 precursor (MRC stack) [stack of 124478 particles in MRC format] | Mao Y, Wang L, Gu C, Herschhorn A, Desormeaux A, Finzi A, Xiang SH, Sodroski JG [Pubmed: 23757493] [DOI: 10.1073/pnas.1307382110] |
38.0 GB | 6.0 Å | |
2014-01-03 | 2D crystal images of the potassium channel MloK1 with and without cAMP ligand [multiple data sets in TIFF format] | Kowal J, Chami M, Baumgartner P, Arheit M, Chiu P-L, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H [Pubmed: 24469021] [DOI: 10.1038/ncomms4106] |
11.6 GB | 7.0 Å | |
2013-12-04 | TRPV1 dataset taken on a K2 direct electron detector [multiple data sets in MRC format] | Liao M, Cao E, Julius D, Cheng Y [Pubmed: 24305160] [DOI: 10.1038/nature12822] |
6.3 TB | 3.275 Å | |
2013-10-30 | Pre-fusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy [3755 micrographs in MRCS format] | Bartesaghi A, Merk A, Borgnia MJ, Milne JLS, Subramaniam S [Pubmed: 24154805] [DOI: 10.1038/nsmb.2711] |
117.8 GB | 6.0 Å | |
2013-08-26 | HIV-1 envelope glycoprotein trimer micrographs [multiple data sets in SPIDER format] | Mao Y, Wang L, Gu C, Herschhorn A, Désormeaux A, Finzi A, Xiang SH, Sodroski JG [Pubmed: 23757493] [DOI: 10.1073/pnas.1307382110] |
586.8 GB | 6.0 Å | |
2013-07-06 | S.cereviseae 80S ribosome direct electron detetector dataset [260 multi-frame micrographs composed of 16 frames each in MRCS format] | Bai XC, Fernandez IS, McMullan G, Scheres SH [Pubmed: 23427024] [DOI: 10.7554/eLife.00461] |
260.0 GB | 4.5 Å |