EMPIAR-10430 - Phase-plate cryo-EM of human TFIIH [multiple data sets in TIFF format]

EMPIAR-10430

Phase-plate cryo-EM of human TFIIH [multiple data sets in TIFF format]

Publication:

The complete structure of the human TFIIH core complex

Greber BJ, Toso DB, Fang J, Nogales E

eLife 8 (2019)

PMID: 30860024

DOI: 10.7554/eLife.44771

Related EMDB entry:

EMD-0452

Deposited:

2020-05-27

Released:

2020-07-06

Last modified:

2020-07-06

Imageset size:

9.19 TB

Imageset DOI:

10.6019/EMPIAR-10430

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned movies of human TFIIH, using the Volta phase plate, dataset 1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3315

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.575, 0.575)

Details:

33 gain-corrected super-resolution frames per movie, collected on Titan Krios with VPP

Files:

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2. Unaligned movies of human TFIIH, using the Volta phase plate, dataset 2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3178

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.575, 0.575)

Details:

33 gain-corrected super-resolution frames per movie, collected on Titan Krios with VPP; the phase plate was not well aligned for movies numbered 528-1395.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Unaligned movies of human TFIIH, using the Volta phase plate, dataset 3

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

4780

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.575, 0.575)

Details:

33 gain-corrected super-resolution frames per movie, collected on Titan Krios with VPP

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Unaligned movies of human TFIIH, using the Volta phase plate, dataset 4

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3279

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.575, 0.575)

Details:

33 gain-corrected super-resolution frames per movie, collected on Titan Krios with VPP

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

5. Unaligned movies of human TFIIH, using the Volta phase plate, dataset 5

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

4947

Image size:

(7420, 7676)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.575, 0.575)

Details:

33 gain-corrected super-resolution frames per movie, collected on Titan Krios with VPP

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. Unaligned movies of human TFIIH, using the Volta phase plate, dataset 6

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2072

Image size:

(7420, 7676)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.575, 0.575)

Details:

51 gain-corrected super-resolution frames per movie, collected on Titan Krios with VPP

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

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Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)