Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-10-22 |  |
Cryo electron micrographs of Pol delta-PCNA-DNA-FEN1 sample [5073 multi-frame micrographs composed of 45 frames each in TIFF format] | Lancey C, Tehseen M, Raducanu VS, Rashid F, Merino N, Ragan TJ, Savva CG, Zaher MS, Shirbini A, Blanco FJ, Hamdan SM, De Biasio A [Pubmed: 32111820] [DOI: 10.1038/s41467-020-14898-6] |
1.6 TB | 3.08 - 4.05 Å |
| 2021-10-19 |  |
Apoferritin, TMV and T20S proteasome in nanofluidic channels [multiple data sets in TIFF format] | Huber ST, Sarajlic E, Huijink R, Weis F, Evers WH, Jakobi AJ [Pubmed: 35060902] [DOI: 10.7554/eLife.72629] |
308.3 GB | 3.0 - 5.4 Å |
| 2021-10-19 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 5720 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
1.9 GB | — |
| 2021-10-19 |  |
Molecular structure and conformation of stereocilia tip-links elucidated by cryo-electron tomography [multiple data sets in MRC format] | Elferich J, Clark S, Ge J, Goehring A, Matsui A, Gouaux E [Pubmed: 34964715] [DOI: 10.7554/eLife.74512] |
58.5 GB | — |
| 2021-10-18 |  |
Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format] | Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] |
8.0 GB | 33.0 - 39.0 Å |
| 2021-10-18 |  |
Cryo electron tomography of FIB-milled lamella of human DLD-1 cells [3 tilt series in MRC format] | Schuller AP, Wojtynek M, Mankus D, Tatli M, Kronenberg-Tenga R, Regmi SG, Dip PV, Lytton-Jean AKR, Brignole EJ, Dasso M, Weis K, Medalia O, Schwartz TU [Pubmed: 34646014] [DOI: 10.1038/s41586-021-03985-3] |
8.0 GB | 33.0 - 39.0 Å |
| 2021-10-18 |  |
E. coli MsbA in nanodiscs in complex with G247 [multiple data sets in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
442.5 GB | 3.9 Å |
| 2021-10-18 |  |
Drug-free A. baumannii MsbA [6113 micrographs in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
268.4 GB | 5.2 Å |
| 2021-10-11 |  |
Nucleolar maturation of the human small subunit processome [multiple data sets in TIFF and MRC formats] | Singh S, Vanden Broeck A, Klinge S [Pubmed: 34516797] [DOI: 10.1126/science.abj5338] EMD-23939 EMD-23936 EMD-24149 EMD-24150 EMD-24151 EMD-24152 EMD-24153 EMD-24154 EMD-24155 EMD-24156 EMD-24157 EMD-24158 EMD-24159 EMD-24160 EMD-24161 EMD-23940 EMD-23938 EMD-24162 EMD-24163 EMD-24164 EMD-24165 EMD-24166 EMD-24167 EMD-24168 EMD-24169 EMD-24170 EMD-24171 EMD-24172 EMD-24173 EMD-24174 EMD-24175 EMD-24176 |
74.6 TB | 2.6 - 6.37 Å |
| 2021-10-05 |  |
Cryo-EM structures of E. coli cytochrome bo3 in MSP Nanodiscs [3446 multi-frame micrographs composed of 50 frames each in TIFF format] | Vallese F [Pubmed: 34417297] [DOI: 10.1073/pnas.2106750118] |
851.4 GB | 2.19 Å |
| 2021-10-01 |  |
Cryo-EM structure of the SpCas9 delta4CE Ternary Complex [2570 multi-frame micrographs composed of 60 frames each in TIFF format] | Laughlin TG, Shams A, Savage DF [Pubmed: 34580310] [DOI: 10.1038/s41467-021-25992-8] |
1.5 TB | 6.2 Å |
| 2021-10-01 |  |
Single particle cryo EM Data of a human Akirin2 proteasome complex [multiple data sets in TIFF and MRC formats] | de Almeida M, Hinterndorfer M, Brunner H, Grishkovskaya I, Singh K, Schleiffer A, Jude J, Deswal S, Kalis R, Vunjak M, Lendl T, Imre R, Roitinger E, Neumann T, Kandolf S, Schutzbier M, Mechtler K, Versteeg GA, Haselbach D, Zuber J [Pubmed: 34711951] [DOI: 10.1038/s41586-021-04035-8] |
2.0 TB | 3.2 Å |
| 2021-10-01 |  |
Training data set for automated 2D class selection [18051 class averages in MRCS format] | Kimanius D, Dong L, Sharov G, Nakane T, Scheres SHW [Pubmed: 34783343] [DOI: 10.1042/bcj20210708] |
20.7 GB | — |
| 2021-09-28 |  |
A. baumannii MsbA in complex with TBT1 [6083 micrographs in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
267.1 GB | 3.97 Å |
| 2021-09-28 |  |
Cryo-electron microscopy of the liposome-embedded type 1 ryanodine receptor [11187 multi-frame micrographs composed of 50 frames each in TIFF format] | Melville ZM, Kim K, Clarke OB, Marks AR [Pubmed: 34469755] [DOI: 10.1016/j.str.2021.08.001] |
2.4 TB | 3.36 - 3.98 Å |
| 2021-09-24 |  |
Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract (lot1) [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.3 TB | 3.5 - 5.5 Å |
| 2021-09-24 |  |
Oligo nucleosome fraction from interphase chromosome in Xenopus egg extract lot 1 [1364 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
634.3 GB | 3.38 - 8.07 Å |
| 2021-09-24 |  |
Mono nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
749.0 GB | 5.12 Å |
| 2021-09-24 |  |
Di nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
805.9 GB | 4.74 Å |
| 2021-09-24 |  |
'Freed' nucleosome isolated from non-crosslinked interphase chromosome in Xenopus egg extract lot2 [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.1 TB | 5.44 Å |
| 2021-09-24 |  |
A microtubule RELION-based pipeline for cryo-EM image processing [1128 multi-frame micrographs composed of 64 frames each in MRC format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31748546] [DOI: 10.1038/s41467-019-13247-6] |
1.6 TB | 3.7 Å |
| 2021-09-24 |  |
A microtubule RELION-based pipeline for cryo-EM image processing [multiple data sets in TIFF format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] |
256.7 GB | 4.2 Å |
| 2021-09-22 |  |
Mono nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1792 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
778.6 GB | 5.64 Å |
| 2021-09-22 |  |
Di nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1386 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
825.4 GB | 8.1 Å |
| 2021-09-22 |  |
Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract lot2 [1456 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
696.5 GB | 3.77 - 4.32 Å |
