EMPIAR-10970 - Particle stacks for VcINDY in Choline Chloride [multiple data sets in MRC format]

EMPIAR-10970

Particle stacks for VcINDY in Choline Chloride [multiple data sets in MRC format]

Publication:

Structural basis of ion - substrate coupling in the Na⁺-dependent dicarboxylate transporter VcINDY

Sauer DB, Marden JJ, Sudar JC, Song J, Mulligan C, Wang DN

Nature communications 13 (2022)

PMID: 35551191

DOI: 10.1038/s41467-022-30406-4

Related EMDB entry:

EMD-25756

Deposited:

2022-02-28

Released:

2022-06-13

Last modified:

2022-06-13

Imageset size:

383.56 GB

Imageset DOI:

10.6019/EMPIAR-10970

Experimental metadata:

Download xml json

Contains:

picked particles - multiframe - processed

Image Sets

1. Particle stack of VcINDY in Choline Chloride Class 1

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

134038

Image size:

(512, 512)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.415, 0.415)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Particle stack of VcINDY in Choline Chloride Class 1

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

75198

Image size:

(512, 512)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.415, 0.415)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Particle stack of VcINDY in Choline Chloride Class 3

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

93938

Image size:

(512, 512)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.415, 0.415)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Particle stack of VcINDY in Choline Chloride Class 4

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

89592

Image size:

(512, 512)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.415, 0.415)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)