Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-03-14 |  |
Movies of a photosynthetic reaction centre - double light-harvesting 1 complex from the bacterium G. phototrophica [19815 multi-frame micrographs composed of 20 frames each in MRCS format] | Qian P, Gardiner AT, Šímová I, Naydenova K, Croll TI, Jackson PJ, Nupur N, Kloz M, Čubáková P, Kuzma M, Zeng Y, Castro-Hartmann P, van Knippenberg B, Goldie KN, Kaftan D, Hrouzek P, Hájek J, Agirre J, Siebert CA, Bína D, Sader K, Stahlberg H, Sobotka R, Russo CJ, Polívka T, Hunter CN, Koblížek M [Pubmed: 35171663] [DOI: 10.1126/sciadv.abk3139] |
6.6 TB | 2.35 - 2.5 Å |
| 2022-03-14 |  |
Marburgvirus nucleoprotein RNA complex [2469 multi-frame micrographs composed of 80 frames each in TIFF format] | Fujita-Fujiharu Y, Sugita Y, Takamatsu Y, Houri K, Igarashi M, Muramoto Y, Nakano M, Tsunoda Y, Taniguchi I, Becker S, Noda T [Pubmed: 35246537] [DOI: 10.1038/s41467-022-28802-x] |
3.3 TB | 3.1 Å |
| 2022-03-14 |  |
Cryo-EM of the human insulin receptor ectodomain in complex with an insulin analog with truncated B chain and enlongated A chain [multiple data sets in MRC format] | Xiong X, Blakely A, Kim JH, Menting JG, Schäfer IB, Schubert HL, Agrawal R, Gutmann T, Delaine C, Zhang YW, Artik GO, Merriman A, Eckert D, Lawrence MC, Coskun Ü, Fisher SJ, Forbes BE, Safavi-Hemami H, Hill CP, Chou DH [Pubmed: 35289328] [DOI: 10.1038/s41589-022-00981-0] |
2.2 TB | 3.4 - 4.4 Å |
| 2022-03-14 |  |
Cryogenic electron microscopy of somatostatin receptor 2/SST14/Gi3 complex [9740 multi-frame micrographs composed of 50 frames each in TIFF format] | Robertson MJ [Pubmed: 35210615] [DOI: 10.1038/s41594-022-00727-5] |
4.5 TB | 2.5 Å |
| 2022-03-14 |  |
Cryogenic electron microscopy of somatostatin receptor 2/Octreotide/Gi3 complex [7576 multi-frame micrographs composed of 55 frames each in TIFF format] | Robertson MJ, Panova O [Pubmed: 35210615] [DOI: 10.1038/s41594-022-00727-5] |
4.2 TB | 2.7 Å |
| 2022-03-14 |  |
SBF SEM of Human term placental villi [multiple data sets in TIFF format] | Lewis RM [DOI: 10.1101/2022.01.26.477815] |
90.2 GB | — |
| 2022-03-14 |  |
2.1Å T20S Proteosome from 200kV Glacios with Selectris Falcon 4 [4075 multi-frame micrographs composed of 854 frames each in EER format] | Koh FA, Khavnekar K, Kotecha A [Pubmed: 35377368] [DOI: 10.3791/63519] |
1.5 TB | 2.1 Å |
| 2022-03-11 |  |
Cryo-EM reconstruction of TMEM106B fold I-d filaments from case 18 with multiple system atrophy [5697 multi-frame micrographs composed of 54 frames each in TIFF format] | Schweighauser M, Arseni D, Bacioglu M, Huang M, Lövestam S, Shi Y, Yang Y, Zhang W, Kotecha A, Garringer HJ, Vidal R, Hallinan GI, Newell KL, Tarutani A, Murayama S, Miyazaki M, Saito Y, Yoshida M, Hasegawa K, Lashley T, Revesz T, Kovacs GG, van Swieten J, Takao M, Hasegawa M, Ghetti B, Spillantini MG, Ryskeldi-Falcon B, Murzin AG, Goedert M, Scheres SHW [Pubmed: 35344985] [DOI: 10.1038/s41586-022-04650-z] |
1.0 TB | 3.64 Å |
| 2022-03-08 |  |
Structure of negative allosteric modulator-bound inactive human calcium-sensing receptor [15464 multi-frame micrographs composed of 50 frames each in TIFF format] | Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, Dandey VP, Tan YZ, Eng E, Lee Y, Kloss B, Liu Z, Hendrickson WA, Potter CS, Carragher B, Graziano J, Conigrave AD, Frank J, Clarke OB, Fan QR [Pubmed: 34916296] [DOI: 10.1073/pnas.2115849118] |
4.0 TB | 5.9 Å |
| 2022-03-08 |  |
Tutorial for high-throughput cryo-EM structure determination of amyloids: Dataset 2 [4000 multi-frame micrographs composed of 34 frames each in TIFF format] | Lövestam S, Scheres SHW [Pubmed: 35244536] [DOI: 10.7554/eLife.76494] |
1.5 TB | 1.92 Å |
| 2022-03-07 |  |
A biological nano-foam: the wall of coniferous bisaccate pollen (data sets) [multiple data sets in TIFF and JPEG formats] | Cojocaru R, Mannix O, Capron M, Miller CG, Jouneau PH, Gallet B, Falconet D, Pacureanu A, Stukins S [Pubmed: 35138906] [DOI: 10.1126/sciadv.abd0892] |
25.2 GB | — |
| 2022-03-07 |  |
Tilt series of EIAV CASPNC VLPs acquired on Krios G3i with Gatan BioQuantum and K3 [multiple data sets in TIFF and MRC formats] | Obr M, Hagen WJ, Dick RA, Yu L, Kotecha A, Schur FK [Pubmed: 35351542] [DOI: 10.1016/j.jsb.2022.107852] |
106.2 GB | 3.3 - 3.6 Å |
| 2022-03-04 |  |
Cryo-electron tomographs of mouse thalamus neurons [60 reconstructed volumes in MRC format] | Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertümpfel C, Mizuno N [Pubmed: 35262630] [DOI: 10.1083/jcb.202106086] |
71.1 GB | — |
| 2022-03-04 |  |
Cryo-electron tomographs of mouse hippocampal neurons [63 reconstructed volumes in MRC format] | Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertümpfel C, Mizuno N [Pubmed: 35262630] [DOI: 10.1083/jcb.202106086] |
88.6 GB | — |
| 2022-03-01 |  |
Cryo electron microscopy of single particles of the Haliangium ochraceum Encapsulin:encapsulated ferritin encapsulin nano compartment [8109 multi-frame micrographs composed of 40 frames each in TIFF format] | Ross J, Baslé A, Clarke DJ, Marles-Wright J [Pubmed: 35080974] [DOI: 10.1126/sciadv.abj4461] |
1.7 TB | 2.4 - 3.5 Å |
| 2022-03-01 |  |
Helical structure of the toxin MakA from Vibrio cholera [1351 multi-frame micrographs composed of 40 frames each in TIFF format] | Berg A, Nadeem A, Uhlin BE, Wai SN, Barandun J [Pubmed: 35131030] [DOI: 10.7554/eLife.73439] |
195.8 GB | 3.65 Å |
| 2022-02-28 |  |
Micrographs of the NaCT-Citrate complex [multiple data sets in TIFF format] | Sauer DB, Song J, Wang B, Hilton JK, Karpowich NK, Mindell JA, Rice WJ, Wang DN [Pubmed: 33597751] [DOI: 10.1038/s41586-021-03230-x] |
2.4 TB | 3.04 Å |
| 2022-02-28 |  |
The structure of natively iodinated bovine thyroglobulin [5016 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim K, Kopylov M, Bobe D, Kelley K, Eng ET, Arvan P, Clarke OB [Pubmed: 34726172] [DOI: 10.1107/S2059798321010056] |
1.2 TB | 2.61 Å |
| 2022-02-28 |  |
Structural visualization of de novo initiation of RNA polymerase II transcription [multiple data sets in TIFF format] | Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colón JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K [Pubmed: 35051353] [DOI: 10.1016/j.molcel.2021.12.020] |
14.3 TB | 3.0 - 7.6 Å |
| 2022-02-25 |  |
CryoEM reconstruction of membrane-bound ESCRT-III filament composed of CHMP1B+IST1 (right-handed) [stack of 66149 particles in MRCS format] | Nguyen HC, Talledge N, McCullough J, Sharma A, Moss FR, Iwasa JH, Vershinin MD, Sundquist WI, Frost A [Pubmed: 32251413] [DOI: 10.1038/s41594-020-0404-x] |
30.6 GB | 3.2 Å |
| 2022-02-25 |  |
CryoEM reconstruction of membrane-bound ESCRT-III filament composed of CHMP1B only [stack of 9661 particles in MRCS format] | Nguyen HC, Talledge N, McCullough J, Sharma A, Moss FR, Iwasa JH, Vershinin MD, Sundquist WI, Frost A [Pubmed: 32251413] [DOI: 10.1038/s41594-020-0404-x] |
3.8 GB | 6.2 Å |
| 2022-02-25 |  |
Cryo-EM of Mechanosensitive Ion Channel Flycatcher1 in GDN [multiple data sets in MRC format] | Jojoa-Cruz S, Saotome K, Lee WH, Patapoutian A, Ward AB [Pubmed: 35165281] [DOI: 10.1038/s41467-022-28511-5] |
876.9 GB | 2.4 - 2.8 Å |
| 2022-02-25 |  |
CryoEM structure of T20S proteasome at 3A from Tundra, 100kV microscope [5176 multi-frame micrographs composed of 18 frames each in MRC format] | Karia D, Koh AF, Yu L, Kotecha A | 1.2 TB | 3.0 Å |
| 2022-02-24 |  |
Affinity-purified PoxtA in complex with 70S ribosomes from Enterococcus faecalis [3640 multi-frame micrographs composed of 40 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 35387982] [DOI: 10.1038/s41467-022-29274-9] |
321.8 GB | 2.4 Å |
| 2022-02-24 |  |
Tutorial for high-throughput cryo-EM structure determination of amyloids: Dataset 1 [331 multi-frame micrographs composed of 34 frames each in TIFF format] | Lövestam S, Scheres SHW [Pubmed: 35244536] [DOI: 10.7554/eLife.76494] |
476.1 GB | 2.07 Å |
