EMPIAR-PDBj - Electron Microscopy Public Image Archive

ストレージ復旧に関する情報 (Updated: 2026年7月16日10:32)

現在、ストレージの障害により、一部データセットがアクセスできないか不完全な状態（Marked: Incomplete dataset）になっています。
以下の順で復旧作業継続中ですが、優先リクエスト承ります（email、inquiry）

PDBj で圧縮したエントリー（復旧済）
PDBj で登録したエントリー（復旧済）
アジアからのエントリー（復旧済）
apo-ferritin, beta-galactosidase（復旧済）
それ以外（アーカイブ化されたものを除く）
リクエスト（随時）

ご不便をおかけしますがご理解よろしくお願いします。

大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。

Release date	Imageset	Title	Authors and references	Size	Resolution
2026-04-20	EMPIAR-13455	Movies of alpha-hemolysin in the lipidic environment (10PC/SM with Hla) [2663 multi-frame micrographs composed of 20 frames each in MRC format]	Chatterjee A, Dutta S [Pubmed: 40640160] [DOI: 10.1038/s41467-025-61741-x] EMD-62304 9kg0 9kto	259.2 GB	2.6 Å
2026-04-20	EMPIAR-13456	BG505.SOSIP.664.T332N gp140 trimer in complex with 44m bnAb [4916 multi-frame micrographs composed of 20 frames each in MRC format]	Dutta S [Pubmed: 37649696] [DOI: 10.1016/j.isci.2023.107579] EMD-36815	733.3 GB	4.4 Å
2026-04-20	EMPIAR-13464	Movies of alpha-hemolysin in the lipidic environment (Egg-PC/SM with Hla) [6248 multi-frame micrographs composed of 20 frames each in MRC format]	Chatterjee A, Dutta S [Pubmed: 40640160] [DOI: 10.1038/s41467-025-61741-x] EMD-62303 EMD-62308	514.3 GB	2.8 - 2.9 Å
2026-04-20	EMPIAR-13465	Complex of RecF-RecO-RecR-DNA from Thermus thermophilus [multiple data sets in TIFF and MRCS formats]	Nirwal S, Czarnocki-Cieciura M, Chaudhary A, Zajko W, Skowronek K, Chamera S, Figiel M, Nowotny M [Pubmed: 37081315] [DOI: 10.1038/s41594-023-00967-z] EMD-15231 EMD-15267 EMD-15308 EMD-16164 8a8j 8a93 8ab0 8bpr	3.2 TB	3.05 - 6.09 Å
2026-04-16	EMPIAR-13023	Cryo-EM structure of yeast Mgm101 bound to 83-mer ssDNA [multiple data sets in TIFF format]	Wheat CT, Bell CE [Pubmed: 41280126] [DOI: 10.1101/2025.10.26.684629] EMD-72979 9yi6	2.4 TB	2.54 Å
2026-04-16	EMPIAR-13025	Cryo-EM structure of yeast Mgm101 bound to duplex DNA annealing intermediate [3701 multi-frame micrographs composed of 50 frames each in TIFF format]	Wheat CT, Bell CE [Pubmed: 41280126] [DOI: 10.1101/2025.10.26.684629] EMD-72980 EMD-72981 9yi7 9yi8	1.5 TB	2.54 - 3.16 Å
2026-04-16	EMPIAR-13163	PglZ in complex with BrxB-BrxC fusion from the Acinetobacter BREX system [multiple data sets in MRC and TIFF formats]	Doyle LA, Stoddard BL, Kaiser BK, Kaiser AJ EMD-74400	4.2 TB	4.46 Å
2026-04-16	EMPIAR-13180	Dimer of PglZ in complex with BrxB-BrxC fusion from the Acinetobacter BREX system [4008 multi-frame micrographs composed of 100 frames each in TIFF format]	Doyle LA, Stoddard BL, Kaiser BK, Kaiser AJ EMD-74435 9zn5	3.8 TB	6.94 Å
2026-04-16	EMPIAR-13181	Dimer of BrxC containing the Walker B mutation from the Acinetobacter BREX system [4122 multi-frame micrographs composed of 100 frames each in TIFF format]	Doyle LA, Stoddard BL, Kaiser BK, Kaiser AJ EMD-74076 9zdx	3.4 TB	2.95 Å
2026-04-16	EMPIAR-13432	CryoEM movies of Influenza A virus Hemagglutinin (A/Darwin/6/2021 H3N2) determined using the SPT Labtech chameleon in the presence of 1x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75846 EMD-75847 11mu 11mv	850.9 GB	2.47 - 2.67 Å
2026-04-16	EMPIAR-13443	CryoEM movies of Rabbit muscle Aldolase determined using the TFS Vitrobot Mark IV in the presence of 0x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75870 EMD-75871 11nt 11nu	344.7 GB	1.97 - 2.25 Å
2026-04-15	EMPIAR-13024	Cryo-EM structures of yeast Mgm101 in the ring and lock-washer apo states [8199 multi-frame micrographs composed of 50 frames each in TIFF format]	Wheat CT, Bell CE [Pubmed: 41280126] [DOI: 10.1101/2025.10.26.684629] EMD-72983 EMD-72984 9yi9 9yia	3.2 TB	2.69 - 2.96 Å
2026-04-15	EMPIAR-13320	Single Particle Raw Images for nicotinic receptor alpha 7 in complex with conotoxin ImIl [13612 multi-frame micrographs composed of 50 frames each in TIFF format]	Stowell MHB, Bhattacharjee B, Noviello CM, Rahman MM, Hibbs RE [Pubmed: 41468893] [DOI: 10.1016/j.str.2025.12.003] EMD-49897 9nx0	7.7 TB	3.06 Å
2026-04-15	EMPIAR-13431	CryoEM movies of Influenza A virus Hemagglutinin (A/Darwin/6/2021 H3N2) determined using the SPT Labtech chameleon in the presence of 0.25x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75844 EMD-75845 11ms 11mt	892.8 GB	2.16 - 2.39 Å
2026-04-15	EMPIAR-13433	CryoEM movies of Influenza A virus Hemagglutinin (A/California/04/2009 H1N1), E47K HA2 stabilizing mutation determined using the SPT Labtech chameleon in the presence of 0x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75848 EMD-75849	217.6 GB	2.84 - 3.5 Å
2026-04-15	EMPIAR-13434	CryoEM movies of Influenza A virus Hemagglutinin (A/California/04/2009 H1N1), E47K HA2 stabilizing mutation determined using the SPT Labtech chameleon in the presence of 0.25x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75851 EMD-75853 11mx 11mz	1.1 TB	2.64 - 2.94 Å
2026-04-15	EMPIAR-13435	CryoEM movies of Azotobacter vinelandii MoFeP determined using the SPT Labtech chameleon in the presence of 0x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75854 EMD-75855 11na 11nb	635.2 GB	2.46 - 2.69 Å
2026-04-15	EMPIAR-13436	CryoEM movies of Azotobacter vinelandii MoFeP determined using the SPT Labtech chameleon in the presence of 0.25x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75856 EMD-75857 11nc 11nd	808.0 GB	2.06 - 2.16 Å
2026-04-15	EMPIAR-13437	CryoEM movies of Azotobacter vinelandii MoFeP determined using the SPT Labtech chameleon in the presence of 1x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75858 EMD-75859 11ne 11nf	715.8 GB	2.34 - 2.49 Å
2026-04-15	EMPIAR-13438	CryoEM movies of Rabbit muscle Aldolase determined using the SPT Labtech chameleon in the presence of 0x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75860 EMD-75861 11nh 11ni	763.0 GB	2.27 - 2.42 Å
2026-04-15	EMPIAR-13439	CryoEM movies of Rabbit muscle Aldolase determined using the SPT Labtech chameleon in the presence of 0.25x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75862 EMD-75863 11nj 11nk	667.3 GB	2.17 - 2.4 Å
2026-04-15	EMPIAR-13440	CryoEM movies of Rabbit muscle Aldolase determined using the SPT Labtech chameleon in the presence of 0.5x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75864 EMD-75865 11nl 11nm	709.6 GB	2.19 - 2.41 Å
2026-04-15	EMPIAR-13441	CryoEM movies of Rabbit muscle Aldolase determined using the SPT Labtech chameleon in the presence of 1x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75866 EMD-75867 11nn 11no	644.9 GB	2.1 - 2.34 Å
2026-04-15	EMPIAR-13442	CryoEM movies of Rabbit muscle Aldolase determined using the SPT Labtech chameleon (gold-coated grids) in the presence of 1x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75868 EMD-75869 11np 11nr	423.4 GB	2.17 - 2.43 Å
2026-04-15	EMPIAR-13444	CryoEM movies of Rabbit muscle Aldolase determined using the TFS Vitrobot Mark IV in the presence of 1x SurfACT. [multiple data sets in EER and MRC formats]	Enos SE, Cook BD, Rahmani H, Narehood SM, Li Y, Kuschnerus IC, Redford HT, Dukakis P, Ji D, Bachochin MJ, Grotjahn DA, Herzik MA [Pubmed: 41889805] [DOI: 10.64898/2026.03.17.712260] EMD-75873 EMD-75874 11nw 11nx	1.0 TB	1.98 - 2.16 Å

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-07-23]

[wwPDB] PDBの大きな変更まであと1年：拡張PDB ID、PDBベータアーカイブ、PDBx/mmCIF