Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-11-12 |  |
Nog1 TAP associated immature ribosomal particles from S. cerevisiae [6828 multi-frame micrographs composed of 40 frames each in MRC format] | Milkereit P, Pöll G [Pubmed: 34813592] [DOI: 10.1371/journal.pone.0252497] |
4.3 TB | 3.1 - 4.72 Å |
| 2021-11-12 |  |
Nog1-TAP associated immature ribosomal particles from S.cerevisae depleted of rpL2 [4024 multi-frame micrographs composed of 40 frames each in MRC format] | Milkereit P, Pöll G [Pubmed: 34813592] [DOI: 10.1371/journal.pone.0252497] |
4.9 TB | 3.7 - 4.7 Å |
| 2021-11-12 |  |
WT MDA5-dsRNA filaments in complex with ADP [4680 multi-frame micrographs composed of 40 frames each in TIFF format] | Yu Q, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
791.8 GB | 3.4 - 3.9 Å |
| 2021-11-12 |  |
Disease variant M854K MDA5-dsRNA filaments in complex with ADP-AlF4 [2177 multi-frame micrographs composed of 60 frames each in TIFF format] | Yu Q, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
2.5 TB | 4.26 - 4.3 Å |
| 2021-11-10 |  |
Structural mechanism of GTPase-powered ribosome-tRNA movement [multiple data sets in MRC and MRCS formats] | Petrychenko V, Peng B-Z, Schwarzer AP, Peske F, Rodnina MV, Fischer N [Pubmed: 34635670] [DOI: 10.1038/s41467-021-26133-x] |
987.5 GB | 2.35 - 9.5 Å |
| 2021-11-09 |  |
Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 54488 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
25.0 GB | 10.5 Å |
| 2021-11-09 |  |
Cryo-electron microscopy reconstruction of leukotriene C4 bound bovine MRP1 [2629 multi-frame micrographs composed of 50 frames each in TIFF format] | Johnson ZL, Chen J [Pubmed: 28238471] [DOI: 10.1016/j.cell.2017.01.041] |
938.2 GB | 3.34 Å |
| 2021-11-09 |  |
CryoEM structure of human LRRC8D [3399 multi-frame micrographs composed of 40 frames each in TIFF format] | Nakamura R, Kasuya G, Yokoyama T, Shirouzu M, Ishitani R, Nureki O [Pubmed: 32415200] [DOI: 10.1038/s42003-020-0951-z] |
1.7 TB | 4.36 Å |
| 2021-11-09 |  |
Single particle cryo-EM of the complex between interphotoreceptor retinoid-binding protein and a monoclonal antibody [2649 multi-frame micrographs composed of 35 frames each in TIFF format] | Sears AE, Albiez S, Gulati S, Wang B, Kiser P, Kovacik L, Engel A, Stahlberg H, Palczewski K [Pubmed: 32860273] [DOI: 10.1096/fj.202000796RR] |
729.9 GB | 7.4 Å |
| 2021-11-09 |  |
Structure of human GABA(B) receptor in an inactive state [3435 multi-frame micrographs composed of 60 frames each in MRC format] | Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, Liu Z, Lin X, Williams JP, Rice WJ, Eng ET, Huang RK, Soni RK, Kloss B, Yu Z, Javitch JA, Hendrickson WA, Slesinger PA, Quick M, Graziano J, Yu H, Fiehn O, Clarke OB, Frank J, Fan QR [Pubmed: 32581365] [DOI: 10.1038/s41586-020-2452-0] |
854.1 GB | 3.3 Å |
| 2021-11-09 |  |
AL amyloid fibril from a glycosylated lambda 1 light chain [3032 multi-frame micrographs composed of 40 frames each in TIFF format] | Radamaker L, Schmidt M, Fändrich M, Karimi-Farsijani S [Pubmed: 34741031] [DOI: 10.1038/s41467-021-26553-9] |
495.9 GB | 3.1 Å |
| 2021-11-08 |  |
Monitoring reversion of hepatitis C virus-induced cellular alterations by Direct-Acting Antivirals using cryo Soft X-ray Tomography and Infrared Microscopy [7 reconstructed volumes in TIFF format] | Perez-Berna AJ, Benseny-Cases N, Rodríguez MJ, Valcarcel R, Carrascosa JL, Gastaminzab P, Pereiroa E [Pubmed: 34726165] [DOI: 10.1107/S2059798321009955] |
260.2 MB | — |
| 2021-11-08 |  |
Cryo electron tomography of spinach leaf tissue [1 tilt series in MRC format] | Zhang J, Zhang D, Sun L, Ji G, Huang X, Niu T, Xu J, Ma C, Zhu Y, Gao N, Xu W, Sun F [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
2.2 GB | — |
| 2021-11-08 |  |
Hedgehog receptor Patched (PTCH1) in complex with a conformation selective nanobody TI23 [stack of 307652 particles in MRCS format] | Zhang Y, Lu WJ, Bulkley DP, Liang J, Ralko A, Han S, Roberts KJ, Li A, Cho W, Cheng Y, Manglik A, Beachy PA [Pubmed: 33139559] [DOI: 10.1073/pnas.2011560117] |
75.2 GB | 3.4 Å |
| 2021-11-08 |  |
Frame-aligned tilt series of cryo-FIB-milled HEK293 cells treated with taxol [40 tilt series in MRC format] | Watanabe R, Buschauer R, Böhning J, Audagnotto M, Lasker K, Lu TW, Boassa D, Taylor S, Villa E [Pubmed: 32783917] [DOI: 10.1016/j.cell.2020.08.004] |
2.1 GB | — |
| 2021-11-08 |  |
Frame aligned tilt series of cryo-FIB milled HEK293 cells expressing pathogenic LRRK2(I2020T)mutant [39 tilt series in MRC format] | Watanabe R, Buschauer R, Böhning J, Audagnotto M, Lasker K, Lu TW, Boassa D, Taylor S, Villa E [Pubmed: 32783917] [DOI: 10.1016/j.cell.2020.08.004] |
2.1 GB | — |
| 2021-11-08 |  |
Single-particle cryo-EM of the full-length merozoite surface protein 1 from Plasmodium falciparum [multiple data sets in MRC and MRCS formats] | Dijkman PM, Marzluf T, Zhang Y, Chang SYS, Helm D, Lanzer M, Bujard H, Kudryashev M [Pubmed: 34078606] [DOI: 10.1126/sciadv.abg0465] |
4.3 TB | 3.1 - 3.6 Å |
| 2021-11-08 |  |
VHUT-cryo-FIB, a method to fabricate frozen-hydrated lamella of tissue specimen for in situ cryo-electron tomography [13 multi-frame micrographs composed of 30 frames each in TIFF format] | Zhang J [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
112.1 GB | 18.0 Å |
| 2021-11-05 |  |
MukBEF(E1407Q)-MatP-DNA in the presence of ATP [multiple data sets in TIFF format] | Bürmann F, Löwe J [Pubmed: 34739874] [DOI: 10.1016/j.molcel.2021.10.011] |
8.5 TB | 3.1 - 13.0 Å |
| 2021-11-05 |  |
CryoEM SPA dataset for NB21, SARS-Cov-2 and NB36 trimeric complex [9390 multi-frame micrographs composed of 63 frames each in TIFF format] | Huang W [Pubmed: 34344900] [DOI: 10.1038/s41467-021-24963-3] |
5.0 TB | 3.55 Å |
| 2021-11-02 |  |
Proton-powered peptide transporter SbmA in lipid nanodisc complexed with Fab S11-1 (SbmA-FabS11-1-MccB17) [7286 multi-frame micrographs composed of 40 frames each in TIFF format] | Ghilarov D, Inaba-Inoue S, Stepien P, Qu F, Michalczyk E, Pakosz Z, Nomura N, Ogasawara S, Walker GC, Rebuffat S, Iwata S, Heddle JG, Beis K [Pubmed: 34516884] [DOI: 10.1126/sciadv.abj5363] |
2.5 TB | 3.59 Å |
| 2021-11-02 |  |
Cryo electron microscopy of ex-vivo murine SAA amyloid fibrils [1429 multi-frame micrographs composed of 40 frames each in TIFF format] | Schmidt MS, Fändrich MF [Pubmed: 30846696] [DOI: 10.1038/s41467-019-09033-z] |
533.9 GB | 3.0 Å |
| 2021-11-02 |  |
CryoEM single particle dataset for NanR dimer-DNA hetero-complex. [3465 multi-frame micrographs composed of 32 frames each in MRC format] | Venugopal H, Horne CR, Ramm G, Dobson RCJ [Pubmed: 33790291] [DOI: 10.1038/s41467-021-22253-6] |
364.8 GB | 3.9 Å |
| 2021-11-02 |  |
CryoEM SPA dataset for NB21, SARS-Cov-2 and NB105 trimeric complex [5874 multi-frame micrographs composed of 45 frames each in TIFF format] | Huang W [Pubmed: 34344900] [DOI: 10.1038/s41467-021-24963-3] |
2.8 TB | 3.58 Å |
| 2021-11-01 |  |
The contracted tail of myophage vb_EcoM_CBA120 (CBA120) [535 multi-frame micrographs composed of 20 frames each in MRCS format] | Nazarov S, Leiman P | 674.2 GB | 4.9 Å |
