EMPIAR-11431 - Cryo-EM micrographs of full-length human BIRC6 dimer with a bound DIABLO (SMAC) homodimer [multiple data sets in EER format]

EMPIAR-11431

Cryo-EM micrographs of full-length human BIRC6 dimer with a bound DIABLO (SMAC) homodimer [multiple data sets in EER format]

Publication:

Structural basis of how the BIRC6/SMAC complex regulates apoptosis and autophagy

Ehrmann JF, Grabarczyk DB, Heinke M, Deszcz L, Kurzbauer R, Hudecz O, Shulkina A, Gogova R, Meinhart A, Versteeg GA, Clausen T

bioRxiv (2022)

DOI: 10.1101/2022.08.30.505823

Related EMDB entry:

EMD-15675

Deposited:

2022-10-30

Released:

2023-02-27

Last modified:

2023-02-27

Imageset size:

24.21 TB

Imageset DOI:

10.6019/EMPIAR-11431

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. raw eer files as generated by the Falcon4 camera, first collection

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

15502

Image size:

(16384, 16384)

Pixel type:

BIT

Pixel spacing:

(0.355, 0.355)

Details:

Krios / Falcon 4. Collected as EER. Total dose 41e/A2. Pixel size given is for the 4x superresolution EER file, as-is. Pixel size for detector image dimensions (4096x4096) is 1.42 Angstroms.
Gain corr file in data/set1/
Particles star file contains combined particles from all datasets.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. raw eer files as generated by the Falcon4 camera, second collection

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

20150

Image size:

(16384, 16384)

Pixel type:

BIT

Pixel spacing:

(0.355, 0.355)

Details:

Krios / Falcon 4. Collected as EER. Total dose 41e/A2. Pixel size given is for the 4x superresolution EER file, as-is. Pixel size for detector image dimensions (4096x4096) is 1.42 Angstroms.
Gain corr file in data/set2/
Particles star file contains combined particles from all datasets.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. raw eer files as generated by the Falcon4 camera, third collection

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

27815

Image size:

(16384, 16384)

Pixel type:

BIT

Pixel spacing:

(0.355, 0.355)

Details:

Krios / Falcon 4. Collected as EER. Total dose 41e/A2. Pixel size given is for the 4x superresolution EER file, as-is. Pixel size for detector image dimensions (4096x4096) is 1.42 Angstroms.
Gain corr file in data/set3/
Particles star file contains combined particles from all datasets.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

See all citations

Protein Data Bank Japan News

[2024-04-17]

306 new PDB entries have been released on 2024-04-17.

[2024-04-09]

[wwPDB] CASP16 Call for Targets

[2024-04-02]

Announcement of the PDBj Newsletter Vol.24 release

[2024-03-21]

[wwPDB] Paper Published on NMR Restraint Validation

[2024-03-13]

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

[2024-03-06]

[wwPDB] Poster Prize Awarded at The Biophysical Society Meeting

[2024-02-15]

Notice of Service Suspension (ASH, DASH, SeSAW, MAFFTash, Spanner, SFAS)

[2024-02-13]

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

[2024-02-06]

[wwPDB] Preprint Published on NMR Restraint Validation

[2024-02-05]

[wwPDB] Preprint Published on CryoEM Archiving and Validation Recommendations

See all news