Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-02-27 |  |
CryoEM micrographs of mouse apoferritin in a range of ice thicknesses on different microscope setups [multiple data sets in MRC and TIFF formats] | Neselu K, Wang B, Rice WJ, Potter CS, Carragher B, Chua EYD [Pubmed: 36742017] [DOI: 10.1016/j.yjsbx.2023.100085] |
5.7 TB | 2.36 - 10.18 Å |
| 2018-08-08 |  |
Sub-2 Å Single-Particle Cryo-EM Reconstruction of AAV2-L336C [multiple data sets in MRC and MRCS formats] | Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D [Pubmed: 30194371] [DOI: 10.1038/s41467-018-06076-6] |
5.7 TB | 1.86 Å |
| 2023-02-13 |  |
Cryo-EM snapshots of Eukaryotic Membrane Proteins in Native Lipid-Bilayer Nanodiscs [multiple data sets in MRC format] | Janson K, Kyrilis FL, Tueting C, Hamdi F, Kastritis PL [Pubmed: 36399657] [DOI: 10.1021/acs.biomac.2c00935] |
5.7 TB | 4.73 - 18.59 Å |
| 2023-09-12 |  |
Single Particle cryoEM dataset of Type I-F CRISPR integration complex from Pseudomonas aeruginosa [9875 multi-frame micrographs composed of 50 frames each in TIFF format] | Santiago-Frangos A, Henriques WS, Wiegand T, Gauvin CC, Buyukyoruk M, Graham AB, Wilkinson RA, Triem L, Neselu K, Eng ET, Lander GC, Wiedenheft B [DOI: 10.1038/s41594-023-01097-2] |
5.7 TB | 3.48 Å |
| 2023-08-18 |  |
Structure of TDP-43 amyloid filaments from type A FTLD-TDP (individual 3) [36507 multi-frame micrographs composed of 40 frames each in TIFF format] | Arseni D, Ryskeldi-Falcon B [Pubmed: 37532939] [DOI: 10.1038/s41586-023-06405-w] |
5.7 TB | 2.39 Å |
| 2022-01-18 |  |
Single-particle cryoEM data of yeast Ubr1-Ubc2-Ub-N-degron complex (initiation) [10932 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
5.7 TB | 3.35 Å |
| 2024-01-05 |  |
The Noc1-Noc2 RNP - a co-transcriptional large ribosomal assembly intermediate [multiple data sets in TIFF format] | Sanghai ZA, Piwowarczyk R, Vanden Broeck A, Klinge S [Pubmed: 37037974] [DOI: 10.1038/s41594-023-00947-3] |
5.7 TB | 4.0 Å |
| 2020-11-23 |  |
CryoEM structure of EPYC1(106-135) peptide-bound Rubisco [13727 multi-frame micrographs composed of 60 frames each in TIFF format] | He S, Chou HT, Matthies D, Wunder T, Meyer MT, Atkinson N, Martinez-Sanchez A, Jeffrey PD, Port SA, Patena W, He G, Chen VK, Hughson FM, McCormick AJ, Mueller-Cajar O, Engel BD, Yu Z, Jonikas MC [Pubmed: 33230314] [DOI: 10.1038/s41477-020-00811-y] |
5.8 TB | 2.06 Å |
| 2022-06-17 |  |
The complex of phosphorylated human cystic fibrosis transmembrane conductance regulator (CFTR) with ATP/Mg and Lumacaftor (VX-809) [7650 multi-frame micrographs composed of 60 frames each in TIFF format] | Fiedorczuk K, Chen J [Pubmed: 34995514] [DOI: 10.1016/j.cell.2021.12.009] |
5.8 TB | 2.7 Å |
| 2024-03-17 |  |
Cryo-EM of HCoV-NL63 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38076883] [DOI: 10.1101/2023.11.22.567964] |
5.8 TB | 8.4 - 9.0 Å |
| 2024-03-26 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein with dC40 deletion [6215 multi-frame micrographs composed of 40 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
5.8 TB | 3.09 - 3.5 Å |
| 2021-03-26 |  |
GluK2/K5 with 6-Cyano-7-nitroquinoxaline-2,3-dione (CNQX) [multiple data sets in TIFF and MRCS formats] | Khanra NK, Meyerson JRM [Pubmed: 33724189] [DOI: 10.7554/eLife.66097] |
5.9 TB | 5.3 Å |
| 2024-07-14 |  |
CryoEM micrographs of a group II RNP in the post-ligation state [multiple data sets in TIFF format] | Xu L, Liu T, Chung K [Pubmed: 37993708] [DOI: 10.1038/s41586-023-06746-6] |
5.9 TB | 3.0 Å |
| 2024-06-06 |  |
Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome [multiple data sets in TIFF and MRC formats] | Eek P, Song T [Pubmed: 38809771] [DOI: 10.7554/eLife.94869] |
5.9 TB | 3.1 Å |
| 2023-04-11 |  |
Human PRPH2-ROM1 oligomers [multiple data sets in TIFF format] | El Mazouni D [Pubmed: 36351012] [DOI: 10.1126/sciadv.add3677] |
6.0 TB | 7.6 - 8.2 Å |
| 2023-07-25 |  |
Cryo-EM structure of the human Sirtuin 6-nucleosome complex [11872 multi-frame micrographs composed of 40 frames each in TIFF format] | Chio US, Rechiche O, Bryll AR, Zhu J, Leith EM, Feldman JL, Peterson CL, Tan S, Armache JP [Pubmed: 37058572] [DOI: 10.1126/sciadv.adf7586] |
6.0 TB | 3.07 Å |
| 2020-10-16 |  |
Structure of human Frizzled5 by fiducial-assisted cryo-EM [10922 multi-frame micrographs composed of 50 frames each in TIFF format] | Tsutsumi N, Gati C, Garcia KC [Pubmed: 32762848] [DOI: 10.7554/eLife.58464] |
6.0 TB | 3.7 Å |
| 2021-03-05 |  |
Movies of a heptameric light-harvesting 2 complex from the marine purple bacterium Mch. purpuratum [9543 multi-frame micrographs composed of 42 frames each in MRCS format] | Gardiner AT, Naydenova K, Castro-Hartmann P, Nguyen-Phan TC, Russo CJ, Sader K, Hunter CN, Cogdell RJ, Qian P [Pubmed: 33579696] [DOI: 10.1126/sciadv.abe4650] |
6.0 TB | 2.38 Å |
| 2024-04-17 |  |
Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes [16285 multi-frame micrographs composed of 1176 frames each in EER format] | Sauer PV, Kotecha A, Koh AF [Pubmed: 38578996] [DOI: 10.1126/sciadv.adk7535] |
6.1 TB | 1.63 - 2.2 Å |
| 2022-02-07 |  |
Cryo electron microscopy SMARCAD1 with nucleosome in ADP-BeF3 bound state [11235 multi-frame micrographs composed of 60 frames each in TIFF format] | Markert JW, Luger K [Pubmed: 34652950] [DOI: 10.1126/sciadv.abk2380] |
6.2 TB | 6.49 Å |
| 2023-04-11 |  |
Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism [multiple data sets in TIFF and MRC formats] | Lomakin IB, Devarkar SC, Patel S, Grada A, Bunick CG [Pubmed: 36864821] [DOI: 10.1093/nar/gkad103] |
6.2 TB | 2.78 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å |
| 2022-05-20 |  |
Single-particle reconstruction of Tick-borne encephalitis virus (Preparation 1) [14135 multi-frame micrographs composed of 30 frames each in MRC format] | Pulkkinen LIA, Barrass SV, Domanska A, Överby AK, Anastasina M, Butcher SJ [Pubmed: 35458522] [DOI: 10.3390/v14040792] |
6.2 TB | 3.5 Å |
| 2020-03-10 |  |
Cryo-EM of GLP-1 receptor bound to TT-OAD2 non-peptidic agonist [multiple data sets in TIFF format] | Zhao P, Liang YL, Belousoff MJ, Deganutti G, Fletcher MM, Willard FS, Bell MG, Christe ME, Sloop KW, Inoue A, Truong TT, Clydesdale L, Furness SGB, Christopoulos A, Wang MW, Miller LJ, Reynolds CA, Danev R, Sexton PM, Wootten D [Pubmed: 31915381] [DOI: 10.1038/s41586-019-1902-z] |
6.2 TB | 3.0 Å |
| 2024-02-09 |  |
5-HT2B receptor bound to LSD obtained by cryo-electron microscopy (cryoEM) [12751 multi-frame micrographs composed of 50 frames each in TIFF format] | Barros-Alvarez X, Cao C, Panova O, Roth BL, Skiniotis G [Pubmed: 36087581] [DOI: 10.1016/j.neuron.2022.08.006] |
6.3 TB | 2.7 Å |
