Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-06-19 |  |
SARS-CoV-2 ORF3a dimer in an MSP1E3D1 lipid nanodisc [6309 multi-frame micrographs composed of 50 frames each in TIFF format] | Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG [Pubmed: 34158638] [DOI: 10.1038/s41594-021-00619-0] |
4.4 TB | 2.9 Å |
| 2020-06-19 |  |
SARS-CoV-2 ORF3a dimer with added Emodin in an MSP1E3D1 lipid nanodisc [6750 multi-frame micrographs composed of 50 frames each in TIFF format] | Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG [Pubmed: 34158638] [DOI: 10.1038/s41594-021-00619-0] |
4.5 TB | 3.7 Å |
| 2020-06-19 |  |
Tetrameric SARS-CoV-2 ORF3a in a lipid nanodisc [7092 multi-frame micrographs composed of 50 frames each in TIFF format] | Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG [Pubmed: 34158638] [DOI: 10.1038/s41594-021-00619-0] |
4.8 TB | 6.5 Å |
| 2020-06-16 |  |
Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis [multiple data sets in TIFF and MRC formats] | Herrera NG, Morano NC, Celikgil A, Georgiev GI, Malonis R, Lee JH, Tong K, Vergnolle O, Massimi A, Yen LY, Noble AJ, Kopylov M, Bonanno JB, Garrett-Thomson SC, Hayes DB, Bortz R, Wirchnianski A, Florez C, Laudermilch E, Haslwanter D, Fels J, Dieterle M, Jangra R, Barnhill J, Mengotto A, Kimmel D, Daily J, Pirofski L, Chandran K, Brenowitz M, Garforth S, Eng E, Lai JR, Almo SC [Pubmed: 32587972] [DOI: 10.1101/2020.06.14.150607] |
484.3 GB | 3.22 Å |
| 2020-06-12 |  |
High resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica [multiple data sets in MRC and TIFF formats] | Righetto RD, Anton L, Adaixo R, Jakob RP, Zivanov J, Mahi MA, Ringler P, Schwede T, Maier T, Stahlberg H [Pubmed: 33037208] [DOI: 10.1038/s41467-020-18870-2] |
839.9 GB | 1.98 Å |
| 2020-06-08 |  |
Cryo-EM structure of coronavirus-HKU1 haemagglutinin esterase [6029 multi-frame micrographs composed of 27 frames each in MRC format] | Hurdiss DL, Drulyte I [Pubmed: 32938911] [DOI: 10.1038/s41467-020-18440-6] |
2.9 TB | 3.39 Å |
| 2020-05-29 |  |
Single particle cryo-EM dataset for LetB from E.coli [multiple data sets in MRC and MRCS formats] | Isom GL, Coudray N, MacRae MR, McManus CT, Ekiert DC, Bhabha G [Pubmed: 32359438] [DOI: 10.1016/j.cell.2020.03.030] |
928.6 GB | 2.96 - 3.78 Å |
| 2020-05-29 |  |
Single-Particle Cryo-EM of Arabinofuranosyltransferase AftD from Mycobacteria, Mutant R1389S [multiple data sets in TIFF, MRC and MRCS formats] | Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, Lowary TL, Archer M, Niederweis M, Potter CS, Carragher B, Mancia F [Pubmed: 32386575] [DOI: 10.1016/j.molcel.2020.04.014] |
2.3 TB | 3.4 - 3.5 Å |
| 2020-05-27 |  |
Ultra-high voltage electron microscope tomography tilt series of 0.7-μm-thick neurite section acquired at 20,000× magnification at an accelerating voltage of 1 MV [1 tilt series in MRC format] | Nishida T, Yoshimura R, Nishi R, Imoto Y, Endo Y [Pubmed: 32133640] [DOI: 10.1111/jmi.12885] |
120.3 MB | — |
| 2020-05-27 |  |
2.7 Angstrom cryo-EM reconstructions of glucose isomerase in the presence of substantial aberrations [202 multi-frame micrographs composed of 200 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.0 TB | 2.7 Å |
| 2020-05-27 |  |
2.6 Angstrom cryo-EM reconstructions of HemQ from Geobacillus in the presence of substantial aberrations [257 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.3 TB | 2.6 Å |
| 2020-05-27 |  |
Atomic resolution structure of apoferritin [3370 multi-frame micrographs composed of 434 frames each in EER format] | Nakane T, Kotecha A, Sente A, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Uchański T, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW [Pubmed: 33087931] [DOI: 10.1038/s41586-020-2829-0] |
538.1 GB | 1.22 Å |
| 2020-05-26 |  |
2.3 Angstrom cryo-EM reconstructions of HemQ from Geobacillus [258 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.4 TB | 2.32 Å |
| 2020-05-26 |  |
Single-Particle Cryo-EM of Arabinofuranosyltransferase AftD from Mycobacteria, Wild-type [multiple data sets in MRCS and MRC formats] | Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, Lowary TL, Archer M, Niederweis M, Potter CS, Carragher B, Mancia F [Pubmed: 32386575] [DOI: 10.1016/j.molcel.2020.04.014] |
2.7 TB | 2.9 Å |
| 2020-05-19 |  |
Whole-body integration of gene expression and single-cell morphology [11416 micrographs in TIFF format] | Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D [Pubmed: 34380046] [DOI: 10.1016/j.cell.2021.07.017] |
1.7 TB | — |
| 2020-05-14 |  |
Three-dimensional ultrastructure of Plasmodium falciparum throughout cytokinesis [multiple data sets in MRC and TIFF formats] | Rudlaff RM, Kraemer S, Marshman J, Dvorin JD [Pubmed: 32511279] [DOI: 10.1371/journal.ppat.1008587] |
3.9 GB | — |
| 2020-05-13 |  |
Structure of replicating SARS-CoV-2 polymerase [multiple data sets in TIFF and MRCS formats] | Hillen HS, Kokic G, Farnung L, Dienemann C, Tegunov D, Cramer P [Pubmed: 32438371] [DOI: 10.1038/s41586-020-2368-8] |
3.0 TB | 2.9 Å |
| 2020-05-01 |  |
SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format] | Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H [Pubmed: 32358202] [DOI: 10.1126/science.abc1669] |
156.2 GB | — |
| 2020-04-24 |  |
Mouse heavy-chain apoferritin movies obtained using a Talos Arctica (200 kV) equipped with a K2 [1679 multi-frame micrographs composed of 90 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
549.5 GB | 1.75 Å |
| 2020-04-24 |  |
Rabbit muscle aldolase movies obtained using a Talos Arctica (200 kV) equipped with a K2 [3316 multi-frame micrographs composed of 44 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
543.3 GB | 2.13 Å |
| 2020-04-21 |  |
Cryo-EM reconstruction of CFA/I pili [2884 micrographs in SPIDER format] | Zheng W, Andersson M, Mortezaei N, Bullitt E, Egelman E [Pubmed: 31576215] [DOI: 10.1107/S2052252519007966] |
183.2 GB | 4.0 Å |
| 2020-04-21 |  |
Cryo-EM structure of TMEM16F in digitonin without calcium bound [stack of 2249 particles in MRCS format] | Feng S, Dang S, Han T, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y [Pubmed: 31291589] [DOI: 10.1016/j.celrep.2019.06.023] |
289.5 GB | 3.9 Å |
| 2020-04-21 |  |
Cardiac thin filament in low calcium state [8820 multi-frame micrographs composed of 50 frames each in TIFF format] | Oda T, Yanagisawa HA, Wakabayashi T [Pubmed: 31954841] [DOI: 10.1016/j.jsb.2020.107450] |
2.5 TB | 3.0 - 12.0 Å |
| 2020-04-17 |  |
Cryo micrographs of microtubules (GDP state) decorated with NDC-NDC chimera of human doublecortin [950 multi-frame micrographs composed of 32 frames each in MRC format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] |
50.4 GB | 4.5 Å |
| 2020-04-14 |  |
Cryo-electron tomography of E. coli minicells [17 multi-frame micrographs composed of 5 frames each in MRC format] | Burt A., Desfosses A., Gutsche I., Clare D. K [Pubmed: 32029744] [DOI: 10.1038/s41467-020-14350-9] |
141.7 GB | 16.0 Å |
