Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-05-27 |  |
2.7 Angstrom cryo-EM reconstructions of glucose isomerase in the presence of substantial aberrations [202 multi-frame micrographs composed of 200 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.0 TB | 2.7 Å |
| 2020-05-27 |  |
2.6 Angstrom cryo-EM reconstructions of HemQ from Geobacillus in the presence of substantial aberrations [257 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.3 TB | 2.6 Å |
| 2020-05-27 |  |
Atomic resolution structure of apoferritin [3370 multi-frame micrographs composed of 434 frames each in EER format] | Nakane T, Kotecha A, Sente A, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Uchański T, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW [Pubmed: 33087931] [DOI: 10.1038/s41586-020-2829-0] |
538.1 GB | 1.22 Å |
| 2020-05-26 |  |
2.3 Angstrom cryo-EM reconstructions of HemQ from Geobacillus [258 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.4 TB | 2.32 Å |
| 2020-05-26 |  |
Single-Particle Cryo-EM of Arabinofuranosyltransferase AftD from Mycobacteria, Wild-type [multiple data sets in MRCS and MRC formats] | Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, Lowary TL, Archer M, Niederweis M, Potter CS, Carragher B, Mancia F [Pubmed: 32386575] [DOI: 10.1016/j.molcel.2020.04.014] |
2.7 TB | 2.9 Å |
| 2020-05-19 |  |
Whole-body integration of gene expression and single-cell morphology [11416 micrographs in TIFF format] | Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D [Pubmed: 34380046] [DOI: 10.1016/j.cell.2021.07.017] |
1.7 TB | — |
| 2020-05-14 |  |
Three-dimensional ultrastructure of Plasmodium falciparum throughout cytokinesis [multiple data sets in MRC and TIFF formats] | Rudlaff RM, Kraemer S, Marshman J, Dvorin JD [Pubmed: 32511279] [DOI: 10.1371/journal.ppat.1008587] |
3.9 GB | — |
| 2020-05-13 |  |
Structure of replicating SARS-CoV-2 polymerase [multiple data sets in TIFF and MRCS formats] | Hillen HS, Kokic G, Farnung L, Dienemann C, Tegunov D, Cramer P [Pubmed: 32438371] [DOI: 10.1038/s41586-020-2368-8] |
3.0 TB | 2.9 Å |
| 2020-05-01 |  |
SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format] | Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H [Pubmed: 32358202] [DOI: 10.1126/science.abc1669] |
156.2 GB | — |
| 2020-04-24 |  |
Mouse heavy-chain apoferritin movies obtained using a Talos Arctica (200 kV) equipped with a K2 [1679 multi-frame micrographs composed of 90 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
549.5 GB | 1.75 Å |
| 2020-04-24 |  |
Rabbit muscle aldolase movies obtained using a Talos Arctica (200 kV) equipped with a K2 [3316 multi-frame micrographs composed of 44 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
543.3 GB | 2.13 Å |
| 2020-04-21 |  |
Cryo-EM reconstruction of CFA/I pili [2884 micrographs in SPIDER format] | Zheng W, Andersson M, Mortezaei N, Bullitt E, Egelman E [Pubmed: 31576215] [DOI: 10.1107/S2052252519007966] |
183.2 GB | 4.0 Å |
| 2020-04-21 |  |
Cryo-EM structure of TMEM16F in digitonin without calcium bound [stack of 2249 particles in MRCS format] | Feng S, Dang S, Han T, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y [Pubmed: 31291589] [DOI: 10.1016/j.celrep.2019.06.023] |
289.5 GB | 3.9 Å |
| 2020-04-21 |  |
Cardiac thin filament in low calcium state [8820 multi-frame micrographs composed of 50 frames each in TIFF format] | Oda T, Yanagisawa HA, Wakabayashi T [Pubmed: 31954841] [DOI: 10.1016/j.jsb.2020.107450] |
2.5 TB | 3.0 - 12.0 Å |
| 2020-04-17 |  |
Cryo micrographs of microtubules (GDP state) decorated with NDC-NDC chimera of human doublecortin [950 multi-frame micrographs composed of 32 frames each in MRC format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] |
50.4 GB | 4.5 Å |
| 2020-04-14 |  |
Cryo-electron tomography of E. coli minicells [17 multi-frame micrographs composed of 5 frames each in MRC format] | Burt A., Desfosses A., Gutsche I., Clare D. K [Pubmed: 32029744] [DOI: 10.1038/s41467-020-14350-9] |
141.7 GB | 16.0 Å |
| 2020-04-09 |  |
Cryo-EM structure of Lumazine Synthase [1198 multi-frame micrographs composed of 41 frames each in MRC format] | Bhella D, Streetley J, Clarke M, Cowton V, Patel A [Pubmed: 31359340] [DOI: 10.1007/s12551-019-00571-w] |
3.0 TB | 2.0 Å |
| 2020-04-09 |  |
Cryo-EM structure of Lumazine Synthase [2874 multi-frame micrographs composed of 39 frames each in MRC format] | Bhella D, Streetley J, Clarke M, Cowton V, Patel A [Pubmed: 31359340] [DOI: 10.1007/s12551-019-00571-w] |
6.8 TB | 2.0 Å |
| 2020-04-03 |  |
Cryo-EM structure of the human PAC1 receptor coupled to an engineered heterotrimeric G protein [2895 multi-frame micrographs composed of 64 frames each in TIFF format] | Kobayashi K, Shihoya W, Nishizawa T, Kadji FMN, Aoki J, Inoue A, Nureki O [Pubmed: 32157248] [DOI: 10.1038/s41594-020-0386-8] |
3.5 TB | 3.9 Å |
| 2020-04-03 |  |
BurrH bound to DNA Origami Goniometer [multiple data sets in MRC and MRCS formats] | Aksel T, Yu Z, Cheng Y, Douglas SM [Pubmed: 33077960] [DOI: 10.1038/s41587-020-0716-8] |
1.3 TB | 6.5 Å |
| 2020-03-23 |  |
Micrographs of DPS collected at 100 keV using a hybrid pixel direct electron detector [739 multi-frame micrographs composed of 32 frames each in MRCS format] | Naydenova K, McMullan G, Peet MJ, Lee Y, Edwards PC, Chen S, Leahy E, Scotcher S, Henderson R, Russo CJ [Pubmed: 31709064] [DOI: 10.1107/S2052252519012612] |
23.3 GB | 3.4 Å |
| 2020-03-23 |  |
Micrographs of E. coli 70S ribosomes collected at 100 keV using a hybrid pixel direct electron detector [127 multi-frame micrographs composed of 32 frames each in MRCS format] | Naydenova K, McMullan G, Peet MJ, Lee Y, Edwards PC, Chen S, Leahy E, Scotcher S, Henderson R, Russo CJ [Pubmed: 31709064] [DOI: 10.1107/S2052252519012612] |
4.0 GB | 7.0 Å |
| 2020-03-20 |  |
Cryo Electron Tomograms of Membrane Fractions of Rabbit Skeletal Muscle for Structural Determination of RyR1 in SR Vesicles [82 tilt series in MRC format] | Chen W, Kudryashev M [Pubmed: 32147968] [DOI: 10.15252/embr.201949891] |
254.2 GB | 12.6 - 38.0 Å |
| 2020-03-20 |  |
Cryo-EM of CRF1 receptor bound to CRF and Gs protein [4300 multi-frame micrographs composed of 62 frames each in TIFF format] | Liang YL, Belousoff MJ, Zhao P, Koole C, Fletcher MM, Truong TT, Julita V, Christopoulos G, Xu HE, Zhang Y, Khoshouei M, Christopoulos A, Danev R, Sexton PM, Wootten D [Pubmed: 32004469] [DOI: 10.1016/j.molcel.2020.01.012] |
2.6 TB | 2.7 - 2.91 Å |
| 2020-03-10 |  |
Cryo-EM of GLP-1 receptor bound to TT-OAD2 non-peptidic agonist [multiple data sets in TIFF format] | Zhao P, Liang YL, Belousoff MJ, Deganutti G, Fletcher MM, Willard FS, Bell MG, Christe ME, Sloop KW, Inoue A, Truong TT, Clydesdale L, Furness SGB, Christopoulos A, Wang MW, Miller LJ, Reynolds CA, Danev R, Sexton PM, Wootten D [Pubmed: 31915381] [DOI: 10.1038/s41586-019-1902-z] |
6.2 TB | 3.0 Å |
