Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-10-30 | Single-particle cryo-EM of HSV-1 Origin Binding Protein bound to OriS and ATPyS [5554 multi-frame micrographs composed of 51 frames each in TIFF format] | Gustavsson E.G, Grünewald K.G, Elias P.E, Hällberg B.M.H [Pubmed: 41125242] [DOI: 10.1093/nar/gkaf1029] |
2.8 TB | 2.76 Å | |
| 2025-10-30 | Cryo-EM SPA dataset of the human nucleosome with the H2AX variant [multiple data sets in EER format] | Panigrahi R, Edwards RA, Glover JNM [Pubmed: 41123210] [DOI: 10.1093/nar/gkaf1028] |
5.7 TB | 3.4 - 4.1 Å | |
| 2025-10-30 | Cryo-EM SPA dataset of the human nucleosome with the γH2AX variant [multiple data sets in TIFF format] | Panigrahi R, Edwards RA, Glover JNM [Pubmed: 41123210] [DOI: 10.1093/nar/gkaf1028] |
5.1 TB | 3.1 - 3.7 Å | |
| 2025-10-30 | Cryo-EM structure of R-eLACCO2 in the lactate-bound state [8250 multi-frame micrographs composed of 48 frames each in TIFF format] | Kamijo Y, Kusakizako T, Nureki O, Nasu Y [Pubmed: N/A] [DOI: 10.1038/s41467-025-64484-x] |
1.7 TB | 2.7 Å | |
| 2025-10-30 | Structure of bacteriophage Sf6 at 7.26 Angstrom resolution by cryo-electron tomography and sub-tomogram averaging with 159 particles (9540 averaging units due to the icosahedral symmetry) [multiple data sets in TIFF and MRC formats] | Tang LT | 49.0 GB | 7.26 Å | |
| 2025-10-29 | Cryo-EM of Azo-ffsy nanofiber (+ALP) [17413 multi-frame micrographs composed of 40 frames each in TIFF format] | Zia A, Wang F [Pubmed: 39255453] [DOI: 10.1021/jacs.4c06775] |
3.8 TB | 2.8 Å | |
| 2025-10-29 | Progesterone-bound DB3 Fab in complex with computationally designed DBPro1156_2 protein binder [multiple data sets in MRC format] | Marchand A, Buckley S, Schneuing A, Pacesa M, Elia M, Gainza P, Elizarova E, Neeser RM, Lee PW, Reymond L, Miao Y, Scheller L, Georgeon S, Schmidt J, Schwaller P, Maerkl SJ, Bronstein M, Correia BE [Pubmed: 39814890] [DOI: 10.1038/s41586-024-08435-4] |
14.6 TB | 3.3 Å | |
| 2025-10-29 | Electron Cryomicroscopy of alpha-Latrotoxin [multiple data sets in MRC, EER and SPIDER formats] | Klink B, Kalyankumar KS, Gatsogiannis C [Pubmed: 39362850] [DOI: 10.1038/s41467-024-52635-5] |
27.8 TB | 2.7 - 6.7 Å | |
| 2025-10-29 | Systematic membrane thickness variation across cellular organelles revealed by cryo-ET [multiple data sets in MRC format] | Glushkova D, Boehm S, Beck M | 97.9 GB | — | |
| 2025-10-28 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with Glycerol [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
3.0 TB | 3.2 Å | |
| 2025-10-28 | Motion corrected .mrc images of Panx1 lacking c-terminal activating domain stack 1 [3653 micrographs in MRC format] | Ehrlich JJ, Kawate T [Pubmed: 39671183] [DOI: 10.1073/pnas.2411898121] |
1.3 TB | 2.9 Å | |
| 2025-10-28 | E. coli 70S ribosome complex (Unmethylated 16S A1408 + arbekacin) [17071 micrographs in MRC format] | Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL [Pubmed: 40866347] [DOI: 10.1038/s41467-025-63278-5] |
1.5 TB | 2.2 Å | |
| 2025-10-28 | CryoEM of human TRiC encapuslating substrate protein tubulin [529181 micrographs in MRC format] | Zhao Y, Schmid M, Chiu W [Pubmed: 40849413] [DOI: 10.1038/s41467-025-63016-x] |
202.1 GB | 3.8 Å | |
| 2025-10-28 | Structural Insights into De Novo Promoter Escape by Mycobacterium tuberculosis RNA Polymerase [10979 multi-frame micrographs composed of 50 frames each in TIFF format] | Brewer JJ, Campbell EA, Darst SA, Delbeau M, Bates Zoullas W | 3.0 TB | — | |
| 2025-10-27 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with pentamidine [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
957.4 GB | 3.7 Å | |
| 2025-10-27 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) [5053 multi-frame micrographs composed of 29 frames each in TIFF format] | Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL [Pubmed: 40866347] [DOI: 10.1038/s41467-025-63278-5] |
3.5 TB | 2.2 Å | |
| 2025-10-27 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418) [5302 multi-frame micrographs composed of 29 frames each in TIFF format] | Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL [Pubmed: 40866347] [DOI: 10.1038/s41467-025-63278-5] |
3.7 TB | 2.4 Å | |
| 2025-10-26 | CryoEM structure of human LARGE1 bound to UDP-GlcA [8074 multi-frame micrographs composed of 50 frames each in TIFF format] | Spellmon NS, Campbell KC, Joesph SJ [Pubmed: 41073435] [DOI: 10.1038/s41467-025-64080-z] |
3.4 TB | 3.0 Å | |
| 2025-10-25 | Cryo-EM raw micrographs of Retron-displaced free PtuAB complex [15227 multi-frame micrographs composed of 51 frames each in TIFF format] | Wang B, Li H [DOI: 10.1038/s41594-025-01702-6] |
6.7 TB | 3.15 Å | |
| 2025-10-25 | Cryo-EM raw micrographs of the Retron Ec78 complex [20372 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang BW, Li HL [DOI: 10.1038/s41594-025-01702-6] |
8.1 TB | 2.69 - 2.75 Å | |
| 2025-10-23 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with melarsoprol [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
1.2 TB | 3.2 Å | |
| 2025-10-23 | Structure of a biohybrid photosystem I-platinum nanoparticle solar fuel catalyst [13349 multi-frame micrographs composed of 40 frames each in TIFF format] | Gisriel CJ, Utschig LM [Pubmed: 39496605] [DOI: 10.1038/s41467-024-53476-y] |
5.2 TB | 2.27 Å | |
| 2025-10-23 | 3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus [multiple data sets in TIFF format] | Benoit LB, Pernet-Gallay KPG, Jouneau PHJ | 258.2 GB | — | |
| 2025-10-23 | Cryoelectron microscopy dataset of apo-state mjHSP16.5 (37C) [10020 multi-frame micrographs composed of 70 frames each in TIFF format] | Miller AP, Reichow SL [Pubmed: 40240363] [DOI: 10.1038/s41467-025-58964-3] |
4.0 TB | 2.35 - 2.5 Å | |
| 2025-10-23 | Raw micrographs of apoferritin specimen sprayed onto precooled grid coated in liquid ethane [466 multi-frame micrographs composed of 1998 frames each in EER format] | Gusach A, Russo CJ, Sader K [DOI: 10.1073/pnas.2516900122] |
332.0 GB | — |