EMPIAR-11645 - Cryo-EM structure of ERGIC-53 H34 deletion mutant in complex with MCFD2 [6175 multi-frame micrographs composed of 50 frames each in TIFF format]

EMPIAR-11645

Cryo-EM structure of ERGIC-53 H34 deletion mutant in complex with MCFD2 [6175 multi-frame micrographs composed of 50 frames each in TIFF format]

Publication:

Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport

Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K

Nature communications 15 (2024)

PMID: 38493152

DOI: 10.1038/s41467-024-46747-1

Related EMDB entry:

EMD-36482

Deposited:

2023-08-07

Released:

2024-05-13

Last modified:

2024-05-13

Imageset size:

1.26 TB

Imageset DOI:

10.6019/EMPIAR-11645

Experimental metadata:

Download xml json

Deposited via PDBj

Contains:

micrographs - multiframe

Image Sets

1. raw movies for ERGIC-53 H34 deletion mutant in complex with MCFD2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6175

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.788, 0.788)

Details:

CountCDSRef_wata211102A3_204-1_000.mrc as a gain reference without rotation and flipping.
Digits (00 to 24) represent the beam shift directions. Beam tilts were refined per direction.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

See all citations

Protein Data Bank Japan News

[2024-07-24]

304 new PDB entries have been released on 2024-07-24.

[2024-06-19]

[wwPDB] Announcing the New PDBx/mmCIF User Guide

[2024-06-11]

[wwPDB] Paper Published on NextGen Archive

[2024-06-07]

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

[2024-04-30]

[wwPDB] Coming soon: Annotation of Protein Modifications in the PDB

[2024-04-09]

[wwPDB] CASP16 Call for Targets

[2024-04-02]

Announcement of the PDBj Newsletter Vol.24 release

[2024-03-21]

[wwPDB] Paper Published on NMR Restraint Validation

[2024-03-13]

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

[2024-03-06]

[wwPDB] Poster Prize Awarded at The Biophysical Society Meeting

See all news