Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-11-18 | E.coli BAM-hinge (BamA-LVPR) [1851 multi-frame micrographs composed of 32 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
231.0 GB | 4.3 Å | |
| 2025-11-18 | E.coli BAM-hinge supressor (BamA-LVPR-T434A) [1505 multi-frame micrographs composed of 35 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
216.4 GB | 4.0 Å | |
| 2025-11-18 | E.coli BAM-hinge (BamA-GSGS) [7814 multi-frame micrographs composed of 48 frames each in TIFF format] | Machin JM, Ranson NA [Pubmed: 41044071] [DOI: 10.1038/s41467-025-63897-y] |
1.3 TB | 4.2 Å | |
| 2025-11-18 | Human antibody Fab MPV499 bound to hMPV DsCav-ES2 [400 micrographs in MRC format] | Khalil AM, Esfahani BG, Miller RJ, Huang J, Kuan G, Balmaseda A, Gordon A, Mousa JJ [DOI: 10.1101/2025.08.29.673069] |
56.8 GB | 6.57 Å | |
| 2025-11-18 | GLIC in MSP1E3D1 nanodisc at pH 7.5 (asolectin) [5188 multi-frame micrographs composed of 40 frames each in MRC format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
1.5 TB | 3.42 Å | |
| 2025-11-16 | Single particle cryo-EM dataset of yeast SSU processome assembly intermediates [multiple data sets in TIFF and MRCS formats] | Buzovetsky OB [Pubmed: 41162712] [DOI: 10.1038/s41586-025-09688-3] |
187.0 TB | 2.65 - 5.96 Å | |
| 2025-11-14 | Cryo-tomography of 1.4 nm-HAN-594 labeled nucleosomes inside cells (ExoSloNano) [41 tilt series in TIFF format] | Young LN, Sherard A, Narasimhan M, Flaherty WA, Bennett E, Rosen MK, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M | 6.5 GB | — | |
| 2025-11-14 | Cryo-tomography of 1.4 nm-HAN-488 labeled ribosomes inside cells (ExoSloNano) [49 tilt series in TIFF format] | Young LN, Sherard A, Bennett E, Rosen MK, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M, Narasimhan M, Flaherty WA | 28.1 GB | — | |
| 2025-11-14 | Cryo-tomography of purified1.4 nm-HAN-488 labeled ribosomes from intact cells for validation of labeling method (ExoSloNano) [37 tilt series in TIFF format] | Young LN, Sherard A, Giraldez AJ, Villa E, Zhou H, Shaikh F, Hutchings J, Riggi M, Narasimhan M, Flaherty WA, Bennett E, Rosen MK | 168.9 GB | — | |
| 2025-11-14 | Cryo-tomography of 5 nm Nanogold labeled ribosomes from intact cells (ExoSloNano) [37 tilt series in TIFF format] | Young LN, Sherard A, Zhou H, Shaikh F, Hutchings J, Riggi M, Narasimhan M, Riggi M, Flaherty WA, Rosen MK, Giraldez AJ, Villa E [DOI: 10.1101/2024.10.12.617288] |
41.6 GB | — | |
| 2025-11-13 | Plasmodium berghei ookinete [1170 micrographs in TIFF format] | Henriksson S, Sandblad L, Billker O | 5.0 GB | — | |
| 2025-11-13 | Cryo-electron tomography of the MTEC transition zone [multiple data sets in MRC format] | McCafferty CL, van den Hoek H, Müller A, Van der Stappen P, Righetto RD, Stearns T, Engel BD [Pubmed: 41364719] [DOI: 10.1371/journal.pbio.3003519] |
1.1 TB | — | |
| 2025-11-13 | Cryo-electron microscopy of crosslinked LetAB from Escherichia coli [multiple data sets in TIFF format] | Santarossa CC, Ekiert DC, Bhabha G [Pubmed: 40166208] [DOI: 10.1101/2025.03.21.644421] |
6.8 TB | 2.8 - 3.5 Å | |
| 2025-11-13 | CryoEM movies of the IFIT2-IFIT3 heterodimer from Mus musculus [multiple data sets in MRC format] | Cook B, Corbett KD, Daugherty MD, Herzik Jr MA [Pubmed: 39990370] [DOI: 10.1101/2025.02.11.637299] |
497.6 GB | 3.22 Å | |
| 2025-11-06 | Human polymerase epsilon bound to PCNA and DNA in the nucleotide bound state [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 39245668] [DOI: 10.1038/s41467-024-52257-x] |
24.6 TB | 2.95 - 5.01 Å | |
| 2025-11-06 | SEM images of Mouse brain tissue sample [720 reconstructed volumes in TIFF format] | Slamková D | 6.0 GB | — | |
| 2025-11-06 | Single particle cryoEM data of Mycobacterium smegmatis EtfD [11952 multi-frame micrographs composed of 30 frames each in EER format] | Courbon GM, Rubinstein JL [Pubmed: 40462971] [DOI: 10.1101/2025.05.14.654035] |
6.0 TB | 3.2 Å | |
| 2025-11-05 | Escherichia coli SduA complex [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 39742808] [DOI: 10.1016/j.cell.2024.11.030] |
1.7 TB | 2.95 Å | |
| 2025-11-05 | GGCX-FIX data [13187 micrographs in MRC format] | Wu W, pengfei L | 1.1 TB | 2.62 Å | |
| 2025-11-05 | Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
6.1 TB | 3.8 - 3.9 Å | |
| 2025-11-04 | Escherichia coli SduA complex bound to DNA [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 39742808] [DOI: 10.1016/j.cell.2024.11.030] |
1.7 TB | 2.84 Å | |
| 2025-11-04 | Single-particle cryo-EM of HSV-1 Origin Binding Protein bound to modified OriS [4021 multi-frame micrographs composed of 50 frames each in TIFF format] | Gustavsson E.G, Grünewald K.G, Elias P.E, Hällberg B.M.H [Pubmed: 41125242] [DOI: 10.1093/nar/gkaf1029] |
1.9 TB | 2.77 Å | |
| 2025-11-04 | Single-particle cryo-electron microscopy of the Cas1-2/3 heterohexamer [3293 multi-frame micrographs composed of 40 frames each in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
765.6 GB | 3.5 Å | |
| 2025-11-04 | Cas1-Cas2/3 heterohexamer bound to foreign dsDNA fragment [2511 multi-frame micrographs composed of 40 frames each in MRC format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
1.7 TB | 3.31 Å | |
| 2025-11-04 | Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
9.1 TB | 4.0 Å |