EMPIAR-11804 - Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA [multiple data sets in TIFF format]

EMPIAR-11804

Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, donor DNA, and target DNA [multiple data sets in TIFF format]

Publication:

Structural mechanism of bridge RNA-guided recombination

Hiraizumi M, Perry NT, Durrant MG, Soma T, Nagahata N, Okazaki S, Athukoralage JS, Isayama Y, Pai JJ, Pawluk A, Konermann S, Yamashita K, Hsu PD, Nishimasu H

Nature 630 (2024) 994-1002

PMID: 38926616

DOI: 10.1038/s41586-024-07570-2

Related EMDB entry:

EMD-37830 EMD-37828 EMD-37827 EMD-37829

Deposited:

2023-12-04

Released:

2024-08-02

Last modified:

2024-08-02

Imageset size:

6.56 TB

Imageset DOI:

10.6019/EMPIAR-11804

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. EMD-37827 (wt)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

5586

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

gain: wt/GridSquare_31369277/Data/FoilHole_31374296_Data_31370760_31370762_20230331_214734_gain.tiff

Files:

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2. EMD-37828 (pre)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

5499

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

gain: pre/GridSquare_5817871/Data/FoilHole_5869224_Data_5868371_5868373_20230806_235409_gain.tiff

Files:

Archives and downloads the selected files into an uncompressed zip file.

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3. EMD-37829 and EMD-37830 (post1 and post2)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

15572

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

gain: post/data_1/GridSquare_18363291/Data/FoilHole_18367703_Data_18364092_18364094_20230818_171256_gain.tiff

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)