Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-11-13 | Cryo-electron microscopy of crosslinked LetAB from Escherichia coli [multiple data sets in TIFF format] | Santarossa CC, Ekiert DC, Bhabha G [Pubmed: 40166208] [DOI: 10.1101/2025.03.21.644421] |
6.8 TB | 2.8 - 3.5 Å | |
| 2025-11-13 | CryoEM movies of the IFIT2-IFIT3 heterodimer from Mus musculus [multiple data sets in MRC format] | Cook B, Corbett KD, Daugherty MD, Herzik Jr MA [Pubmed: 39990370] [DOI: 10.1101/2025.02.11.637299] |
497.6 GB | 3.22 Å | |
| 2025-11-06 | Human polymerase epsilon bound to PCNA and DNA in the nucleotide bound state [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 39245668] [DOI: 10.1038/s41467-024-52257-x] |
24.6 TB | 2.95 - 5.01 Å | |
| 2025-11-06 | SEM images of Mouse brain tissue sample [720 reconstructed volumes in TIFF format] | Slamková D | 6.0 GB | — | |
| 2025-11-06 | Single particle cryoEM data of Mycobacterium smegmatis EtfD [11952 multi-frame micrographs composed of 30 frames each in EER format] | Courbon GM, Rubinstein JL [Pubmed: 40462971] [DOI: 10.1101/2025.05.14.654035] |
6.0 TB | 3.2 Å | |
| 2025-11-05 | Escherichia coli SduA complex [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 39742808] [DOI: 10.1016/j.cell.2024.11.030] |
1.7 TB | 2.95 Å | |
| 2025-11-05 | GGCX-FIX data [13187 micrographs in MRC format] | Wu W, pengfei L | 1.1 TB | 2.62 Å | |
| 2025-11-05 | Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
6.1 TB | 3.8 - 3.9 Å | |
| 2025-11-04 | Escherichia coli SduA complex bound to DNA [multiple data sets in TIFF and MRC formats] | Luuk L, Jinek M [Pubmed: 39742808] [DOI: 10.1016/j.cell.2024.11.030] |
1.7 TB | 2.84 Å | |
| 2025-11-04 | Single-particle cryo-EM of HSV-1 Origin Binding Protein bound to modified OriS [4021 multi-frame micrographs composed of 50 frames each in TIFF format] | Gustavsson E.G, Grünewald K.G, Elias P.E, Hällberg B.M.H [Pubmed: 41125242] [DOI: 10.1093/nar/gkaf1029] |
1.9 TB | 2.77 Å | |
| 2025-11-04 | Single-particle cryo-electron microscopy of the Cas1-2/3 heterohexamer [3293 multi-frame micrographs composed of 40 frames each in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
765.6 GB | 3.5 Å | |
| 2025-11-04 | Cas1-Cas2/3 heterohexamer bound to foreign dsDNA fragment [2511 multi-frame micrographs composed of 40 frames each in MRC format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
1.7 TB | 3.31 Å | |
| 2025-11-04 | Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
9.1 TB | 4.0 Å | |
| 2025-10-30 | Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes [854 multi-frame micrographs composed of 33 frames each in MRC format] | Grba D.N., Hirst J. [Pubmed: 41032597] [DOI: 10.1126/sciadv.adz0693] |
537.1 GB | 4.7 - 20.0 Å | |
| 2025-10-30 | Pichia pastoris mitochondrial complex I reconstituted into cMSP26 nanodiscs [7574 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba D.N., Hirst J. [Pubmed: 41032597] [DOI: 10.1126/sciadv.adz0693] |
1.0 TB | 2.8 - 3.8 Å | |
| 2025-10-30 | Single-particle cryo-EM of HSV-1 Origin Binding Protein bound to Hairpin-dT10 DNA [multiple data sets in TIFF format] | Gustavsson E.G, Grünewald K.G, Elias P.E, Hällberg B.M.H [Pubmed: 41125242] [DOI: 10.1093/nar/gkaf1029] |
6.2 TB | 2.9 - 4.38 Å | |
| 2025-10-30 | Single-particle cryo-EM of HSV-1 Origin Binding Protein bound to OriS and ATPyS [5554 multi-frame micrographs composed of 51 frames each in TIFF format] | Gustavsson E.G, Grünewald K.G, Elias P.E, Hällberg B.M.H [Pubmed: 41125242] [DOI: 10.1093/nar/gkaf1029] |
2.8 TB | 2.76 Å | |
| 2025-10-30 | Cryo-EM SPA dataset of the human nucleosome with the H2AX variant [multiple data sets in EER format] | Panigrahi R, Edwards RA, Glover JNM [Pubmed: 41123210] [DOI: 10.1093/nar/gkaf1028] |
5.7 TB | 3.4 - 4.1 Å | |
| 2025-10-30 | Cryo-EM SPA dataset of the human nucleosome with the γH2AX variant [multiple data sets in TIFF format] | Panigrahi R, Edwards RA, Glover JNM [Pubmed: 41123210] [DOI: 10.1093/nar/gkaf1028] |
5.1 TB | 3.1 - 3.7 Å | |
| 2025-10-30 | Cryo-EM structure of R-eLACCO2 in the lactate-bound state [8250 multi-frame micrographs composed of 48 frames each in TIFF format] | Kamijo Y, Kusakizako T, Nureki O, Nasu Y [Pubmed: N/A] [DOI: 10.1038/s41467-025-64484-x] |
1.7 TB | 2.7 Å | |
| 2025-10-30 | Structure of bacteriophage Sf6 at 7.26 Angstrom resolution by cryo-electron tomography and sub-tomogram averaging with 159 particles (9540 averaging units due to the icosahedral symmetry) [multiple data sets in TIFF and MRC formats] | Tang LT | 49.0 GB | 7.26 Å | |
| 2025-10-29 | Cryo-EM of Azo-ffsy nanofiber (+ALP) [17413 multi-frame micrographs composed of 40 frames each in TIFF format] | Zia A, Wang F [Pubmed: 39255453] [DOI: 10.1021/jacs.4c06775] |
3.8 TB | 2.8 Å | |
| 2025-10-29 | Progesterone-bound DB3 Fab in complex with computationally designed DBPro1156_2 protein binder [multiple data sets in MRC format] | Marchand A, Buckley S, Schneuing A, Pacesa M, Elia M, Gainza P, Elizarova E, Neeser RM, Lee PW, Reymond L, Miao Y, Scheller L, Georgeon S, Schmidt J, Schwaller P, Maerkl SJ, Bronstein M, Correia BE [Pubmed: 39814890] [DOI: 10.1038/s41586-024-08435-4] |
14.6 TB | 3.3 Å | |
| 2025-10-29 | Electron Cryomicroscopy of alpha-Latrotoxin [multiple data sets in MRC, EER and SPIDER formats] | Klink B, Kalyankumar KS, Gatsogiannis C [Pubmed: 39362850] [DOI: 10.1038/s41467-024-52635-5] |
27.8 TB | 2.7 - 6.7 Å | |
| 2025-10-29 | Systematic membrane thickness variation across cellular organelles revealed by cryo-ET [multiple data sets in MRC format] | Glushkova D, Boehm S, Beck M | 97.9 GB | — |