Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-12-03 | GLIC F116A mutant in MSP1E3D1 nanodisc at pH 2.5 [11131 multi-frame micrographs composed of 1575 frames each in EER format] | Li Z, Bharambe N, Manishrao Lande K, Feddersen B, Manikkoth Balakrishna A, Biggin PC, Sahu G, Basak S [Pubmed: 41129221] [DOI: 10.1073/pnas.2512811122] |
7.3 TB | 2.14 Å | |
| 2025-12-01 | Integrin alpha-5 beta-1 in complex with MINT1526a Fab [multiple data sets in TIFF, MRC and MRCS formats] | Nguyen AN, Campbell MGC [Pubmed: 39829743] [DOI: 10.1101/2025.01.08.631572] |
3.1 TB | 2.7 Å | |
| 2025-12-01 | Human VDAC1 in cMSP1D1 circularized nanodiscs, monomeric form. [multiple data sets in EER and MRC formats] | Broutzakis G, Gatsogiannis C [Pubmed: 41145501] [DOI: 10.1038/s41467-025-65363-1] |
2.2 TB | 7.21 Å | |
| 2025-12-01 | Human VDAC1 in cMSP1D1 circularized nanodiscs, dimeric form. [multiple data sets in EER and MRC formats] | Broutzakis G, Gatsogiannis C [Pubmed: 41145501] [DOI: 10.1038/s41467-025-65363-1] |
2.2 TB | 6.99 Å | |
| 2025-11-30 | Cryo-EM micrographs of R2Tg retrotransposon initiating target-primed reverse transcription [10628 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson ME, Zhang F [Pubmed: 40603868] [DOI: 10.1038/s41467-025-61321-z] |
1.7 TB | 3.2 Å | |
| 2025-11-30 | Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex A [3636 multi-frame micrographs composed of 1512 frames each in EER format] | Heberlig GW, La Clair JJ, Burkart MD [Pubmed: 39663458] [DOI: 10.1038/s41586-024-08306-y] |
2.8 TB | 2.97 Å | |
| 2025-11-25 | Source data for AI-directed voxel extraction and volume EM identify intrusions as sites of mitochondrial contact [multiple data sets in TIFF format] | Padman BS, Lindblom R, Lazarou M [DOI: 10.1083/jcb.202411138] |
32.8 GB | — | |
| 2025-11-24 | Structural mechanism of the Retron-Eco7 anti-phage defense system [7847 multi-frame micrographs composed of 50 frames each in TIFF format] | Ishikawa J, Yoneyama K, Yamashita K, Nishimasu H | 1.7 TB | 2.58 - 2.76 Å | |
| 2025-11-21 | Single-particle cryo electron microscopy of Integrin a4b7 bound to MadCAM-1 [multiple data sets in TIFF, MRC and MRCS formats] | Hollis JA, Campbell MG [Pubmed: 40929264] [DOI: 10.1126/sciadv.adx9567] |
3.5 TB | 3.05 Å | |
| 2025-11-21 | GLIC in MSP1E3D1 nanodisc at pH 2.5 [6449 multi-frame micrographs composed of 60 frames each in TIFF format] | Bharambe N, Li Z, Seiferth D, Balakrishna AM, Biggin PC, Basak S [Pubmed: 38580666] [DOI: 10.1038/s41467-024-47370-w] |
3.5 TB | 2.6476 Å | |
| 2025-11-21 | Cryo Electron Microscopy of hIAPP and rIAPP fibrils in different aggregation solutions [stack of 1200 particles in MRCS format] | Valli DV, Maj MM [DOI: 10.1021/acs.biochem.5c00042] |
737.2 GB | — | |
| 2025-11-20 | Cryo-electron microscopy of LetAB from Escherichia coli [multiple data sets in TIFF format] | Santarossa CC, Ekiert DC, Bhabha G [Pubmed: 40166208] [DOI: 10.1101/2025.03.21.644421] |
6.2 TB | 2.9 - 3.5 Å | |
| 2025-11-19 | Single-particle cryo electron microscopy of Integrin aEb7 bound to E-cadherin EC12 [multiple data sets in TIFF, MRC and MRCS formats] | Hollis JA, Campbell MG [Pubmed: 40929264] [DOI: 10.1126/sciadv.adx9567] |
10.8 TB | 3.37 Å | |
| 2025-11-19 | RNAP-TopoI complex on long-overhang scaffold [multiple data sets in TIFF and MRC formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 2.5 TB | 3.9 - 5.6 Å | |
| 2025-11-19 | Single particle cryo-EM of Norovirus NS3 in complex with ATP-gamma-S [multiple data sets in EER, MRC and MRCS formats] | Haas M, Drulyte I, Hurdiss DL [DOI: 10.1101/2025.06.17.659504] |
725.7 GB | 2.9 Å | |
| 2025-11-19 | Single particle cryo-EM dataset of CoREST complex bound to U2AF2 [12845 multi-frame micrographs composed of 1170 frames each in EER format] | Hicks CW, Alani RM [Pubmed: 39713349] [DOI: 10.1101/2024.12.12.627852] |
7.0 TB | 5.14 Å | |
| 2025-11-19 | Structure of the RhGB07 Prefusion, Closed-state trimeric spike protein [7842 multi-frame micrographs composed of 1 frames each in MRC format] | Ni D, Lau K, Ekundayo B [DOI: 10.1101/2025.09.03.673949] |
490.1 GB | 2.97 Å | |
| 2025-11-19 | CryoEM data of alpha-synuclein fibril induced by psychosine [1642 multi-frame micrographs composed of 1 frames each in EER format] | Jenkins RA, Sawaya MR, Sun C, Rodriguez JA [Pubmed: 41000844] [DOI: 10.1101/2025.09.12.675751] |
1.0 TB | 2.72 Å | |
| 2025-11-19 | CryoEM structure of methylmalonic acid semialdehyde dehydrogenase from Burkholderia cenocepacia at 2.38A resolution [4643 multi-frame micrographs composed of 99 frames each in TIFF format] | Abendroth J, Davies D.R., Yang M., Horanyi P.S., Lorimer D.D., Edwards T.E. | 1.8 TB | 2.38 Å | |
| 2025-11-19 | Surface morphometrics reveals local membrane thickness variation in organellar subcompartments [multiple data sets in TIFF and MRC formats] | Medina M, Chang YT, Rahmani H, Fuentes D, Barad BA, Grotjahn DA [Pubmed: 40654968] [DOI: 10.5281/ZENODO.14984805] |
575.4 GB | 12.9 Å | |
| 2025-11-18 | RNAP-TopoI complex on bubble scaffold [multiple data sets in TIFF and MRCS formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 1.7 TB | 3.8 - 4.3 Å | |
| 2025-11-18 | RNAP-TopoI complex on short-overhang scaffold [multiple data sets in TIFF and MRCS formats] | Vidmar VV, Lamour VL, Weixlbaumer AW | 1.5 TB | 3.8 - 4.4 Å | |
| 2025-11-18 | Cryo Electron Microscopy of hIAPP A25P, S28P and S29P mutants [multiple data sets in TIFF and EER formats] | Ooi SA, Valli D, Maj M [Pubmed: 40850490] [DOI: 10.1016/j.jmb.2025.169405] |
16.2 TB | 3.0 - 4.07 Å | |
| 2025-11-18 | Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex B [3274 multi-frame micrographs composed of 1519 frames each in EER format] | Heberlig GW, La Clair JJ, Burkart MD [Pubmed: 39663458] [DOI: 10.1038/s41586-024-08306-y] |
2.6 TB | 3.23 Å | |
| 2025-11-18 | Tyrocidine synthetase modules 1 and 2 crosslinked in the condensation state, complex C [4473 multi-frame micrographs composed of 2639 frames each in EER format] | Heberlig GW, La Clair JJ, Burkart MD [Pubmed: 39663458] [DOI: 10.1038/s41586-024-08306-y] |
4.3 TB | 3.31 Å |