Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some datasets are currently inaccessible or incomplete (marked as Incomplete dataset).
We are pleased to report that the following entries have been restored:
EMPIAR-10577 (New)We are still accepting requests for datasets you would like us to download first (email, inquiry).
We apologize for the inconvenience and appreciate your understanding.
EMPIAR-PDBj services will be suspended during the following period for a legally required inspection of electrical equipment.
During this period, the website and data downloads from EMPIAR-PDBj will be unavailable.
Please use EMPIAR-EBI instead.
We apologize for any inconvenience.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-08-25 |  |
Cryogenic Electron Micrographs of E. coli 50S ribosome LiCl core particle [multiple data sets in TIFF format] | Larsson DSD, Selmer M [Pubmed: 36358955] [DOI: 10.3390/biom12111605] |
7.9 TB | 2.84 - 9.4 Å |
| 2026-08-17 |  |
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82 [16094 multi-frame micrographs composed of 60 frames each in EER format] | Cantwell Chater RP, Cioffi CL, Vandenberg RJ, Shahsavar A [Pubmed: 41332641] [DOI: 10.1101/2025.04.21.649698] |
8.2 TB | 2.79 Å |
| 2026-08-06 |  |
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543 [12374 multi-frame micrographs composed of 60 frames each in EER format] | Cantwell Chater RP, Cioffi CL, Vandenberg RJ, Shahsavar A [Pubmed: 41332641] [DOI: 10.1101/2025.04.21.649698] |
6.4 TB | 2.49 Å |
| 2026-08-07 |  |
Antibody (1B2) Bound Rifamycin Synthetase Module 2 [10263 multi-frame micrographs composed of 50 frames each in MRC format] | Cogan DP | 968.5 GB | 2.94 Å |
| 2026-08-07 |  |
FIB-SEM image volumes of dinoflagellate cells from: Symbiodinium microadriaticum, Fugacium kawagutii, Breviolum minutum, and Crypthecodinium cohnii [multiple data sets in TIFF format] | Philipp L, Weber SC [DOI: 10.64898/2026.08.10.743404] |
271.3 GB | — |
| 2026-08-06 |  |
Iota toxin Ib D452A [4073 multi-frame micrographs composed of 52 frames each in TIFF format] | Yamada T, Nakanishi R, Sugita Y, Ninomiya Y, Noda T, Tsuge H | 933.7 GB | — |
| 2026-08-18 |  |
Single-particle cryo-EM datasets of H2A-nucleosome with scFv antibodies bound [5273 multi-frame micrographs composed of 40 frames each in EER format] | Tan DT | 4.8 TB | 3.9 Å |
| 2026-10-09 |  |
Cryo-EM of Ca2+ treated Connexin-46/50 in amphipol [7646 multi-frame micrographs composed of 45 frames each in TIFF format] | Flores JA, O’Neill SE, Haddad BG, Jarodsky JM, Reichow SL [DOI: 10.1038/s41467-026-77891-5] |
2.6 TB | 3.3 Å |
| 2026-07-24 |  |
Single-particle cryo-EM datasets of macroH2A-nucleosome with scFv antibodies bound [multiple data sets in TIFF format] | Tan DT | 5.6 TB | 2.9 Å |
| 2026-08-17 |  |
Cryo-EM map of lysozyme [3503 multi-frame micrographs composed of 981 frames each in EER format] | Hicks CW | 1.7 TB | 4.61 Å |
| 2026-07-28 |  |
Cryo-EM micrographs of a near fully-activated intermediate A2AR-mini-Gαβγ complex [8875 multi-frame micrographs composed of 79 frames each in TIFF format] | Bi M, Wang X, Wang J, Xu J, Sun W, Adediwura VA, Miao Y, Cheng Y, Ye L [Pubmed: 39875358] [DOI: 10.1038/s41467-025-56434-4] |
2.4 TB | 2.63 - 3.36 Å |
| 2026-07-20 |  |
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 [multiple data sets in MRC format] | Jensen JLJ, Thomas PVT, Joyce MGJ [Pubmed: 40882161] [DOI: 10.1128/mbio.01036-25] |
928.7 GB | 3.23 Å |
| 2026-08-05 |  |
CryoEM movies of Mo-nitrogenase and FeSII from Azotobacter vinelandii in presence of oxygen [multiple data sets in EER and MRC formats] | Narehood SM, Cook BD, Srisantitham S, Eng VH, Shiau AA, McGuire KL, Britt RD, Herzik Jr MA, Tezcan FA [Pubmed: 39779844] [DOI: 10.1038/s41586-024-08311-1] |
4.9 TB | 2.27 - 3.94 Å |
| 2026-10-07 |  |
Rabbit ryanodine receptor type 1 complexed with FKBP12.6 and calmodulin in the presence of dantrolene and Mg2+ [3954 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim K, Clarke OB [DOI: 10.1038/s41467-026-76519-y] |
868.8 GB | 2.96 - 3.09 Å |
| 2026-07-29 |  |
MPNN-RFdiff designed RNA molecule [15834 multi-frame micrographs composed of 1116 frames each in EER format] | Hingey JH, Spellmon NS, Favor AF, Kubaney AK, Baker DB, Haack DBH, Rudolfs BR, Mancino AM, Yu ZY, Toor NT, Das RD | 6.3 TB | 4.8 Å |
| 2026-07-29 |  |
Struct2SeQ designed RNA molecule [17275 multi-frame micrographs composed of 1017 frames each in EER format] | Mancino AM, Hingey JH, He SH, Haack DBH, Rudolfs BR, Spellmon NS, Yu ZY, Toor NT, Das RD | 6.5 TB | 4.7 Å |
| 2026-09-21 |  |
MPNN-fixbb designed RNA molecule [12594 multi-frame micrographs composed of 1116 frames each in EER format] | Haack DBH, Spellmon NS, Favor AF, Kubaney AK, Baker DB, Rudolfs BR, Hingey JH, Mancino AM, Yu ZY, Toor NT, Das RD [Pubmed: 42658941] [DOI: 10.1126/science.aeg6829] |
5.4 TB | 4.0 Å |
| 2026-07-29 |  |
gRNAde designed RNA molecule [10689 multi-frame micrographs composed of 1134 frames each in EER format] | Spellmon NS, Haack DBH, Joshi CJ, Rudolfs BR, Hingey JH, Mancino AM, Yu ZY, Toor NT, Das RD | 4.4 TB | 2.9 Å |
| 2026-07-13 |  |
Cryo electron micrographs of 3-methylcrotonyl-CoA carboxylase and its variable α-Cap Assemblies in Legionella pneumophila [31641 micrographs in MRC format] | Durie CL [Pubmed: 41509382] [DOI: 10.64898/2025.12.22.694428] |
988.8 GB | 2.13 - 2.68 Å |
| 2026-07-10 |  |
Cryo Electron Microscopy micrographs of multidrug resistance-associated protein 2 (MRP2) EQ Mutant bound to ATP [7532 multi-frame micrographs composed of 50 frames each in TIFF format] | Koide EK, Pietz HLP, Beltran JB, Chen JC [Pubmed: 39779684] [DOI: 10.1038/s41467-024-55810-w] |
4.0 TB | 3.4 - 3.41 Å |
| 2026-07-24 |  |
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex [multiple data sets in TIFF and MRC formats] | Pelea O., Fernandez Carrera J., Gerecke S. E., Chanez C., Jinek M. [Pubmed: 41642947] [DOI: 10.1126/science.adz1884] |
1.2 TB | 2.81 Å |
| 2026-09-03 |  |
Cryo-electron tomography of functionally validated synapses in human induced neurons [multiple data sets in MRC format] | Sun RS | 164.1 GB | — |
| 2026-10-07 |  |
Rabbit ryanodine receptor type 1 complexed with FKBP12.6, calmodulin, dantrolene, ATP, 4-chloro-m-cresol, and caffeine [5959 multi-frame micrographs composed of 40 frames each in TIFF format] | Kim K, Clarke OB [DOI: 10.1038/s41467-026-76519-y] |
1.1 TB | 2.49 - 3.09 Å |
| 2026-10-07 |  |
Rabbit ryanodine receptor type 1 complexed with FKBP12.6, calmodulin, ADP, 4-chloro-m-cresol, and caffeine [9130 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim K, Clarke OB [DOI: 10.1038/s41467-026-76519-y] |
2.3 TB | 2.08 - 2.52 Å |
| 2026-07-14 |  |
Stomatin encapsulates aquaporin-1 and urea transporter-B in the erythrocyte membrane [multiple data sets in TIFF and MRC formats] | Vallese F, Clarke OB [Pubmed: 41921000] [DOI: 10.1126/sciadv.aec1721] |
3.6 TB | 2.0 Å |
