Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-08-07 |  |
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses [2120 micrographs in MRC format] | Geraets JA, Flatt JW, Domanska A, Butcher SJ [Pubmed: 31185007] [DOI: 10.1371/journal.pbio.3000281] |
2.2 TB | 4.0 Å |
| 2019-07-29 |  |
CryoWriter: 3.5 Å structure of human 20S proteasome with bound Fabs from microfluidic protein isolation, and 1.9 Å TMV structure [523 multi-frame micrographs composed of 30 frames each in TIFF format] | Schmidli C, Albiez S, Rima L, Righetto R, Mohammed I, Oliva P, Kovacik L, Stahlberg H, Braun T [Pubmed: 31292253] [DOI: 10.1073/pnas.1907214116] |
136.5 GB | 3.5 Å |
| 2019-07-29 |  |
Movies of horse spleen apoferritin on multifunctional ultrastable graphene supports for electron cryomicroscopy [480 multi-frame micrographs composed of 38 frames each in MRCS format] | Naydenova K, Peet MJ, Russo CJ [Pubmed: 31127045] [DOI: 10.1073/pnas.1904766116] |
570.0 GB | 2.1 Å |
| 2019-07-25 |  |
Open state structure of the full-length TRPV2 cation channel with a resolved pore turret domain [2447 multi-frame micrographs composed of 50 frames each in MRCS format] | Dosey TL, Wang Z, Fan G [Pubmed: 30598551] [DOI: 10.1038/s41594-018-0168-8] |
934.8 GB | 3.6 Å |
| 2019-07-25 |  |
TRPV2 ion channel gating through allosteric domain coupling revealed by cryo-EM [1969 multi-frame micrographs composed of 35 frames each in MRCS format] | Serysheva II, Chiu W, Wensel TG [Pubmed: 30598551] [DOI: 10.1038/s41594-018-0168-8] |
3.6 TB | 4.0 Å |
| 2019-07-25 |  |
LAT1-CD98hc bound to MEM-108 Fab [multiple data sets in TIFF and MRCS formats] | Lee Y, Wiriyasermkul P, Jin C, Quan L, Ohgaki R, Okuda S, Kusakizako T, Nishizawa T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Endou H, Nagamori S, Kanai Y, Nureki O [Pubmed: 31160781] [DOI: 10.1038/s41594-019-0237-7] |
4.1 TB | 3.31 Å |
| 2019-06-21 |  |
LAT1-CD98hc bound to HBJ127 Fab and MEM-108 Fab [1869 multi-frame micrographs composed of 40 frames each in TIFF format] | Lee Y, Wiriyasermkul P, Jin C, Quan L, Ohgaki R, Okuda S, Kusakizako T, Nishizawa T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Endou H, Nagamori S, Kanai Y, Nureki O [Pubmed: 31160781] [DOI: 10.1038/s41594-019-0237-7] |
969.9 GB | 4.1 Å |
| 2019-06-21 |  |
Cryo electron micrographs of human cystic fibrosis transmembrane conductance regulator (CFTR) in complex with GLPG [3335 multi-frame micrographs composed of 50 frames each in TIFF format] | Zhang ZZ, Liu FL, Chen JC [Pubmed: 31221859] [DOI: 10.1126/science.aaw7611] |
1.4 TB | 3.2 Å |
| 2019-06-19 |  |
Extracellular albumin and endosomal ions prime enterovirus particles for uncoating that can be prevented by fatty acid saturation [multiple data sets in MRC format] | Domanska A, Ruokolainen VP, Pelliccia M, Laajala MA, Marjomäki VS, Butcher SJ [Pubmed: 31189702] [DOI: 10.1128/JVI.00599-19] |
2.4 TB | 3.5 - 3.6 Å |
| 2019-06-07 |  |
AL amyloid fibril from a lambda 1 light chain [843 micrographs in MRC format] | Radamaker L, Schmidt M, Fändrich M, Fritz G [Pubmed: 30894526] [DOI: 10.1038/s41467-019-09032-0] |
44.7 GB | 3.3 Å |
| 2019-06-07 |  |
Single particle reconstruction of 52 kDa apo-state streptavidin at 3.3 Angstrom resolution [1448 multi-frame micrographs composed of 32 frames each in MRC format] | Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW [Pubmed: 31160591] [DOI: 10.1038/s41467-019-10368-w] |
2.4 TB | 3.3 Å |
| 2019-06-07 |  |
Single particle reconstruction of 52 kDa biotin-bound state streptavidin at 3.2 Angstrom resolution [3309 multi-frame micrographs composed of 32 frames each in MRC format] | Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW [Pubmed: 31160591] [DOI: 10.1038/s41467-019-10368-w] |
5.5 TB | 3.2 Å |
| 2019-06-07 |  |
Scanning electron diffraction data collected from peptide microcrystals [30000 micrographs in DM4 format] | Gallagher-Jones M, Rodriguez JA, Bustillo K, Ophus C [Pubmed: 30675524] [DOI: 10.1038/s42003-018-0263-8] |
144.3 GB | — |
| 2019-05-21 |  |
Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [518 micrographs in DM4 format] | Peddie CP, Jones ML, Collinson LM | 129.8 GB | — |
| 2019-05-21 |  |
Serial Block Face SEM of HeLa cell pellet with 5 nm pixels and 50 nm slices (benchmark dataset) [518 micrographs in DM4 format] | Peddie CP, Jones ML, Collinson LM | 129.8 GB | — |
| 2019-05-09 |  |
Cryo-EM structure of TRPV5 full length in nanodisc [stack of 930 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
100.1 GB | 3.0 Å |
| 2019-05-09 |  |
Cryo-EM structure of TRPV5 with calmodulin bound [stack of 1135 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
118.1 GB | 3.3 Å |
| 2019-05-09 |  |
apo-LRRC8A in MSP2N2 nanodiscs [1779 multi-frame micrographs composed of 50 frames each in MRCS format] | Kern DM [Pubmed: 30775971] [DOI: 10.7554/eLife.42636] |
739.5 GB | 4.18 Å |
| 2019-05-08 |  |
Cryo-EM structure of TRPV5 1-660 in nanodisc [stack of 2968 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
224.3 GB | 2.9 Å |
| 2019-05-08 |  |
Integrative structure and functional anatomy of a nuclear pore complex [multiple data sets in TIFF format] | Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP [Pubmed: 29539637] [DOI: 10.1038/nature26003] |
11.8 GB | 28.0 Å |
| 2019-05-07 |  |
A collection of yeast cell cryo-ET data [1488 tilt series in MRC format] | Gan L, Ng CT, Chen C, Cai S [Pubmed: 27605704] [DOI: 10.1091/mbc.E16-07-0506] |
2.5 TB | — |
| 2019-05-02 |  |
Cryo-EM structure of TRPV5 W583A in nanodisc [stack of 385896 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
94.4 GB | 2.8 Å |
| 2019-05-02 |  |
Structure of the human PKD1-PKD2 complex [stack of 3774 particles in MRCS format] | Su Q [Pubmed: 30093605] [DOI: 10.1126/science.aat9819] |
209.8 GB | 3.6 Å |
| 2019-05-01 |  |
Structure of NDH the complex I-like molecule of photosynthesis [multiple data sets in TIFF format] | Laughlin TG, Bayne AN, Trempe JF, Savage DF, Davies KM [Pubmed: 30742075] [DOI: 10.1038/s41586-019-0921-0] |
1.8 TB | 3.1 - 3.8 Å |
| 2019-05-01 |  |
Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases [3134 micrographs in MRC format] | Gulati S, Palczewski K, Engel A, Stahlberg H, Kovacik L [Pubmed: 30820458] [DOI: 10.1126/sciadv.aav4322] |
166.3 GB | 3.4 Å |
