Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-03-18 |  |
Single particle cryo-EM structure of 14-aa-GS-RIG-I in complex with p3SLR30 [5375 multi-frame micrographs composed of 38 frames each in TIFF format] | Wang W, Pyle AM | 2.7 TB | 3.4 Å |
| 2024-03-20 |  |
Single particle cryo-EM structure of RIG-I in complex with p3SLR14 [3531 multi-frame micrographs composed of 40 frames each in TIFF format] | Wang W, Pyle AM | 1.1 TB | 3.8 Å |
| 2023-06-02 |  |
Mycobacterium phage Patience [8640 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM | 2.2 TB | 2.39 Å |
| 2024-04-16 |  |
Mycobacterium phage Adjutor [6667 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM | 2.0 TB | 2.66 Å |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 1.03 mrad [29 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
262.0 MB | 37.2 Å |
| 2024-02-13 |  |
Cryo-EM structure of the chain-elongating E3 ubiquitin ligase UBR5 [multiple data sets in MRC format] | Hodáková Z, Grishkovskaya I, Haselbach D, Kotisch H [Pubmed: 37409633] [DOI: 10.15252/embj.2022113348] |
2.1 TB | 3.0 Å |
| 2023-06-09 |  |
Cryo-EM SPA dataset of 2-oxoglutarate dehydrogenase complex from a Chaetomium thermophilum native cell extract [25991 multi-frame micrographs composed of 13 frames each in MRC format] | Skalidis I, Kyrilis FL, Tüting C, Träger TK, Hamdi F, Kastritis PL [Pubmed: 37217784] [DOI: 10.1038/s42003-023-04885-0] |
6.8 TB | 3.35 Å |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 3.26 mrad [22 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
2.1 GB | 32.9 Å |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 4.83 mrad [22 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
3.9 GB | 18.6 Å |
| 2023-10-23 |  |
High-throughput electron tomography identifies centriole over-elongation in plasma cell disorders [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G, Goldschmidt H, Müller-Tidow C, Raab MS, John L, Seckinger A, Brobeil A, Dreger P, Tornóczky T, Pajor L, Hegenbart U, Schönland SO, Schwab Y, Krämer A [Pubmed: 37821581] [DOI: 10.1038/s41375-023-02056-y] |
7.7 TB | — |
| 2023-04-25 |  |
Cryo-EM structure of pre-consensus elemental paused elongation complex [4419 multi-frame micrographs composed of 50 frames each in TIFF format] | Kang JY, Mishanina TV, Bao Y, Chen J, Llewellyn E, Liu J, Darst SA, Landick R [Pubmed: 36795753] [DOI: 10.1073/pnas.2215945120] |
1.9 TB | 3.2 Å |
| 2023-06-09 |  |
CryoEM movies of extracted Arctic variant Aß42 fibrils from mouse brains [2138 multi-frame micrographs composed of 40 frames each in TIFF format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1038/s41467-023-38495-5] |
356.5 GB | 3.0 Å |
| 2023-06-09 |  |
CryoEM movies of extracted Arctic variant Aß42 fibrils from mouse brains labelled with methoxy-X04 [4165 multi-frame micrographs composed of 40 frames each in TIFF format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1038/s41467-023-38495-5] |
648.2 GB | 3.2 Å |
| 2023-09-22 |  |
In-tissue cryo electron tomography of App^NL-G-F amyloid plaques [23 tilt series in MRC format] | Leistner C, Wilkinson M, Burgess A, Lovatt M, Goodbody S, Xu Y, Deuchars S, Radford SE, Ranson NA, Frank RAW [Pubmed: 37198197] [DOI: 10.1002/pro.3943] |
38.0 GB | 3.0 Å |
| 2023-05-11 |  |
Cryo-EM structure of consensus elemental paused elongation complex [2525 multi-frame micrographs composed of 50 frames each in TIFF format] | Kang JY, Mishanina TV, Bao Y, Chen J, Llewellyn E, Liu J, Darst SA, Landick R [Pubmed: 36795753] [DOI: 10.1073/pnas.2215945120] |
1.1 TB | 3.3 - 3.8 Å |
| 2023-05-09 |  |
Cryo-EM SPA datasets of broadly neutralizing antibody 2-36 in complex with prefusion SARS-CoV-2 and SARS-CoV spike glycoproteins (K3 movies/.tif files) [multiple data sets in TIFF format] | Casner RG, Cerutti G, Shapiro L [Pubmed: 34836485] [DOI: 10.1080/22221751.2021.2011623] |
2.5 TB | 3.24 Å |
| 2023-05-16 |  |
CryoEM of E. coli RNA polymerase Sigma N bound to mismatch DNA fragment dhsU36mm2 (-12A) [multiple data sets in TIFF, MRC and MRCS formats] | Mueller AU, Chen J, Wu M, Chiu C, Nixon BT, Campbell EA, Darst SA [Pubmed: 36972428] [DOI: 10.1073/pnas.2220874120] |
8.2 TB | 2.6 - 3.0 Å |
| 2023-05-16 |  |
CryoEM of E. coli RNA polymerase Sigma N bound to full duplex DNA fragment dhsU36 (-12T) [multiple data sets in TIFF, MRC and MRCS formats] | Mueller AU, Chen J, Wu M, Chiu C, Nixon BT, Campbell EA, Darst SA [Pubmed: 36972428] [DOI: 10.1073/pnas.2220874120] |
2.4 TB | 2.8 - 3.1 Å |
| 2023-05-16 |  |
CryoEM of E. coli RNA polymerase Sigma N bound to mismatch DNA fragment dhsU36mm1 (-12T) [multiple data sets in TIFF, MRC and MRCS formats] | Mueller AU, Chen J, Wu M, Chiu C, Nixon BT, Campbell EA, Darst SA [Pubmed: 36972428] [DOI: 10.1073/pnas.2220874120] |
4.4 TB | 3.0 Å |
| 2023-04-28 |  |
ARE-ABCF VmlR2 in complex with the 70S ribosome [6384 micrographs in MRC format] | Crowe-McAuliffe C, Hauryliuk V, Wilson DN [Pubmed: 36951104] [DOI: 10.1093/nar/gkad193] |
338.6 GB | 2.9 Å |
| 2024-03-18 |  |
Ex vivo murine AApoAII amyloid fibril [3083 multi-frame micrographs composed of 40 frames each in TIFF format] | Andreotti S, Schmidt M, Fändrich M [Pubmed: 38199491] [DOI: 10.1016/j.jmb.2024.168441] |
510.6 GB | 2.4 - 2.6 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the small dataset of ∆KsgA 30S plus KsgA sample [stack of 588015 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
320.1 GB | 2.8 Å |
| 2023-08-18 |  |
Single particle cryo-EM dataset of Mus musculus mitochondrial complex I [2674 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba DN, Chung I, Bridges HR, Agip AA, Hirst J [Pubmed: 37531432] [DOI: 10.1126/sciadv.adi1359] |
1.1 TB | 2.39 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the large dataset of ∆KsgA 30S plus KsgA sample [stack of 1821263 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
991.2 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the ∆KsgA immature 30S sample [stack of 775859 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
422.2 GB | 3.3 Å |
