Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-04-17 |  |
Spatial mapping of hepatic ER and mitochondria architecture reveals zonated remodeling in fasting and obesity [multiple data sets in TIFF format] | Parlakgul G | 2.9 TB | — |
| 2022-01-14 |  |
High resolution 3D imaging of liver subcellular architecture and its link to metabolic function [multiple data sets in TIFF format] | Parlakgul G, Hotamisligil GS [Pubmed: 35264794] [DOI: 10.1038/s41586-022-04488-5] |
2.1 TB | — |
| 2023-08-20 |  |
AP2 bound to the APA domain of SGIP in the presence of heparin [12276 multi-frame micrographs composed of 60 frames each in TIFF format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
4.7 TB | 3.9 Å |
| 2023-08-18 |  |
AP2 in the presence of heparin [3046 micrographs in MRC format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
267.5 GB | 3.5 - 3.9 Å |
| 2023-08-20 |  |
AP2 bound to Y-cargo motif of Tgn38 in the presence of heparin [5958 micrographs in MRC format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
523.1 GB | 4.7 Å |
| 2021-02-10 |  |
Unaligned movies for FA core complex and symmetric complex [multiple data sets in TIFF format] | Passmore LA, Shakeel S [Pubmed: 31666700] [DOI: 10.1038/s41586-019-1703-4] |
13.2 TB | 4.2 Å |
| 2020-06-30 |  |
Structural basis for strand-transfer inhibitor binding to HIV intasomes [multiple data sets in MRC format] | Passos DO, Li M, Jóźwik IK, Zhao XZ, Santos-Martins D, Yang R, Smith SJ, Jeon Y, Forli S, Hughes SH, Burke TR, Craigie R, Lyumkis D [Pubmed: 32001521] [DOI: 10.1126/science.aay8015] |
544.6 GB | 2.8 Å |
| 2020-10-23 |  |
170314, Five-day-old Col-0 Arabidopsis thaliana root, phloem pole unloading zone (339-381 um from the root tip) [multiple data sets in MRC format] | Paterlini A, Belevich I, Jokitalo E, Helariutta Y [Pubmed: 31182845] [DOI: 10.1038/s41477-019-0429-5] |
43.2 GB | — |
| 2015-04-30 |  |
Human TRPA1 ion channel with agonist AITC [stack of 43585 particles in MRC format] | Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D [Pubmed: 25855297] [DOI: 10.1038/nature14367] |
453.0 GB | 4.24 Å |
| 2022-06-22 |  |
Processed FIB-SEM images of murine hypothalamus-derived GT1-7 neuronal cells [multiple data sets in TIFF format] | Peddie CJ, Collinson LM [DOI: 10.3389/fcell.2022.819571] |
140.5 GB | — |
| 2021-10-29 |  |
Benchmark FIB SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson L | 1.7 TB | — |
| 2020-10-14 |  |
FIB SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
1.1 TB | — |
| 2021-01-22 |  |
SBF SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
16.5 GB | — |
| 2020-12-09 |  |
SBF SEM images of a Zebrafish hindbrain macrophage containing a replicating Toxoplasma gondii tachizoite [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
338.4 GB | — |
| 2020-12-09 |  |
SBF SEM images of a Zebrafish hindbrain containing several Toxoplasma gondii tachizoites at different stages of replication [multiple data sets in DM4 and TIFF formats] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
175.2 GB | — |
| 2021-10-27 |  |
SBF SEM images of a Zebrafish hindbrain containing several Toxoplasma gondii tachizoites at different stages of replication [multiple data sets in DM4 format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
553.9 GB | — |
| 2023-05-22 |  |
Benchmark FIB SEM data (#2) of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
511.9 GB | — |
| 2019-05-21 |  |
Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [518 micrographs in DM4 format] | Peddie CP, Jones ML, Collinson LM | 129.8 GB | — |
| 2019-05-21 |  |
Serial Block Face SEM of HeLa cell pellet with 5 nm pixels and 50 nm slices (benchmark dataset) [518 micrographs in DM4 format] | Peddie CP, Jones ML, Collinson LM | 129.8 GB | — |
| 2020-08-06 |  |
Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [18 multi-frame micrographs composed of 300 frames each in TIFF format] | Peddie CP, Jones ML, Collinson LM | 15.6 GB | — |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 1.03 mrad [29 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
262.0 MB | 37.2 Å |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 3.26 mrad [22 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
2.1 GB | 32.9 Å |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 4.83 mrad [22 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
3.9 GB | 18.6 Å |
| 2023-06-29 |  |
E. coli 50S ribosome bound to compound streptogramin analog SAB001 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Fraser JS, Lee DJ, Seiple IB | 1.6 TB | 2.23 Å |
| 2022-06-17 |  |
E. coli 50S ribosome bound to compounds VM2 and VS1 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB | 1.3 TB | 2.29 Å |
