Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-10-25 |  |
Thermoplasma acidophilum 20S [1175 multi-frame micrographs composed of 50 frames each in MRC format] | Eng ET, Kopylov M, Negro CJ, Dallaykan S, Rice WJ, Jordan KJ, Kelley K, Carragher BO, Potter CS | 1.5 TB | 2.1 Å |
| 2023-11-06 |  |
Single particle cryo-EM structure of RIG-I:RNA:Riplet ternary complex [3420 multi-frame micrographs composed of 40 frames each in TIFF format] | Wang W, Pyle AM [DOI: 10.1038/s41467-023-42982-0] |
1.5 TB | — |
| 2024-01-23 |  |
SpCas9 bound to 6 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.5 TB | 3.87 Å |
| 2023-12-12 |  |
Optimizing Cryo-FIB Lamellas for sub-5Å in situ Structural Biology [multiple data sets in MRC format] | Khavnekar S, Vrbovská V, Zaoralová M, Kelley R, Beck F, Kotecha A, Plitzko JM, Erdmann PS [DOI: 10.1101/2022.06.16.496417] |
1.5 TB | 4.6 Å |
| 2019-04-05 |  |
mouse MDA5-dsRNA Filaments in presence of 1mM AMPPNP [multiple data sets in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
1.5 TB | 3.68 - 3.93 Å |
| 2022-03-08 |  |
Tutorial for high-throughput cryo-EM structure determination of amyloids: Dataset 2 [4000 multi-frame micrographs composed of 34 frames each in TIFF format] | Lövestam S, Scheres SHW [Pubmed: 35244536] [DOI: 10.7554/eLife.76494] |
1.5 TB | 1.92 Å |
| 2022-05-25 |  |
A drug and ATP binding site in type 1 ryanodine receptor [6890 multi-frame micrographs composed of 50 frames each in TIFF format] | Melville Z, Dridi H, Yuan Q, Reiken S, Wronska A, Liu Y, Clarke OB, Marks AR [Pubmed: 35580609] [DOI: 10.1016/j.str.2022.04.010] |
1.5 TB | 2.45 Å |
| 2021-10-01 |  |
Cryo-EM structure of the SpCas9 delta4CE Ternary Complex [2570 multi-frame micrographs composed of 60 frames each in TIFF format] | Laughlin TG, Shams A, Savage DF [Pubmed: 34580310] [DOI: 10.1038/s41467-021-25992-8] |
1.5 TB | 6.2 Å |
| 2022-09-20 |  |
Human amino acid transporter EAAT2 [multiple data sets in TIFF format] | Kato T, Kusakizako T, Yamashita K, Nishizawa T, Nureki O [Pubmed: 35953475] [DOI: 10.1038/s41467-022-32442-6] |
1.5 TB | 3.49 - 3.58 Å |
| 2020-10-09 |  |
mouse cGAS with nucleosomes from 293T [2979 multi-frame micrographs composed of 40 frames each in MRC format] | Zhao B, Xu P, Rowlett CM, Jing T, Shinde O, Lei Y, West AP, Liu WR, Li P [Pubmed: 32911481] [DOI: 10.1038/s41586-020-2749-z] |
1.5 TB | 4.36 Å |
| 2023-10-06 |  |
CryoEM micrographs collected on a RAD51-ADP filament sample [9214 multi-frame micrographs composed of 50 frames each in TIFF format] | Appleby R, Bollschweiler D, Chirgadze DY, Joudeh L, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
1.5 TB | 3.6 Å |
| 2022-03-14 |  |
2.1Å T20S Proteosome from 200kV Glacios with Selectris Falcon 4 [4075 multi-frame micrographs composed of 854 frames each in EER format] | Koh FA, Khavnekar K, Kotecha A [Pubmed: 35377368] [DOI: 10.3791/63519] |
1.5 TB | 2.1 Å |
| 2021-10-25 |  |
Cryo-EM structure of PilA-N/C from Geobacter sulfurreducens [7651 multi-frame micrographs composed of 27 frames each in TIFF format] | Gu Y, Srikanth V, Salazar-Morales AI, Jain R, O'Brien JP, Yi SM, Soni RK, Samatey FA, Yalcin SE, Malvankar NS [Pubmed: 34471289] [DOI: 10.1038/s41586-021-03857-w] |
1.5 TB | 3.8 Å |
| 2023-08-18 |  |
Single particle cryo-EM dataset of Mus musculus mitochondrial complex I bound with inhibitor Piericidin A [1200 multi-frame micrographs composed of 25 frames each in MRC format] | Grba DN, Chung I, Bridges HR, Agip AA, Hirst J [Pubmed: 37531432] [DOI: 10.1126/sciadv.adi1359] |
1.6 TB | 2.84 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 1-22 with spike protein [3610 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.6 TB | 2.3 Å |
| 2022-12-12 |  |
Phencyclidine-bound GluN1a-GluN2B NMDA receptors [multiple data sets in TIFF format] | Chou THC, Furukawa HF [Pubmed: 35637422] [DOI: 10.1038/s41594-022-00772-0] |
1.6 TB | 4.3 Å |
| 2023-01-30 |  |
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer annealed duplex [2038 multi-frame micrographs composed of 36 frames each in MRC format] | Bell CE [Pubmed: 36543802] [DOI: 10.1038/s41467-022-35572-z] |
1.6 TB | 3.4 Å |
| 2021-10-22 |  |
Cryo electron micrographs of Pol delta-PCNA-DNA-FEN1 sample [5073 multi-frame micrographs composed of 45 frames each in TIFF format] | Lancey C, Tehseen M, Raducanu VS, Rashid F, Merino N, Ragan TJ, Savva CG, Zaher MS, Shirbini A, Blanco FJ, Hamdan SM, De Biasio A [Pubmed: 32111820] [DOI: 10.1038/s41467-020-14898-6] |
1.6 TB | 3.08 - 4.05 Å |
| 2022-12-06 |  |
Single particle cryo-EM structure of RIG-I bound to the end and internal sites of OH3SLR30 (+ATP) [3663 multi-frame micrographs composed of 53 frames each in TIFF format] | Wang W, Pyle AM [Pubmed: 36272408] [DOI: 10.1016/j.molcel.2022.09.029] |
1.6 TB | 2.9 - 3.0 Å |
| 2021-05-16 |  |
Cryo-EM structure of a thermostable encapsulin from T. maritima [2771 multi-frame micrographs composed of 67 frames each in TIFF format] | Wiryaman TI, Toor N [Pubmed: 33953921] [DOI: 10.1107/S2052252521001949] |
1.6 TB | 2.0 Å |
| 2021-05-25 |  |
Human DPP9-CARD8 complex [multiple data sets in TIFF format] | Sharif H, Hollingsworth LR, Griswold AR, Hsiao JC, Wang Q, Bachovchin DA, Wu H [Pubmed: 34019797] [DOI: 10.1016/j.immuni.2021.04.024] |
1.6 TB | 3.3 Å |
| 2024-04-15 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 5-7 in complex with prefusion SARS-CoV-2 spike glycoprotein [6688 multi-frame micrographs composed of 60 frames each in TIFF format] | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L [Pubmed: 34706271] [DOI: 10.1016/j.celrep.2021.109928] |
1.6 TB | 3.5 Å |
| 2022-07-18 |  |
Staphylococcal self-loading helicases couple the staircase mechanism 1 with inter domain high flexibility [3345 multi-frame micrographs composed of 40 frames each in MRC format] | Qiao C [Pubmed: 35871290] [DOI: 10.1093/nar/gkac625] |
1.6 TB | 3.9 - 3.96 Å |
| 2021-12-23 |  |
cryoEM structure of Gq-coupled MRGPRX2 with small molecule agonist (R)-Zinc-3573 [5359 multi-frame micrographs composed of 60 frames each in TIFF format] | Cao C, Fay J, Roth B [Pubmed: 34789874] [DOI: 10.1038/s41586-021-04126-6] |
1.6 TB | 2.9 Å |
| 2023-06-29 |  |
E. coli 50S ribosome bound to compound streptogramin analog SAB001 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Fraser JS, Lee DJ, Seiple IB | 1.6 TB | 2.23 Å |
