오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-01-23 | SPA cryo-EM micrographs of chicken ubiquitinated FANCD2-FANCI3D with ds 44-bpDNA [6515 multi-frame micrographs composed of 40 frames each in MRC format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
866.4 GB | 4.4 Å | |
2024-01-16 | Cryo Electron tomography of germinated polar tubes from Vairimorpha necatrix [multiple data sets in MRC format] | Sharma H, Jespersen N, Ehrenbolger K, Carlson L.A., Barandun J [DOI: 10.1101/2023.05.31.543061] |
94.1 GB | 46.0 Å | |
2024-01-16 | Single particle cryo-EM dataset of contracted cowpea chlorotic mottle virus in plunge-frozen vitrified ice [6651 multi-frame micrographs composed of 1533 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
3.4 TB | 1.64 Å | |
2024-01-16 | Single particle cryo-EM dataset of partially contracted cowpea chlorotic mottle virus in laser-melted and revitrified ice [7902 multi-frame micrographs composed of 40 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
3.9 TB | 8.0 Å | |
2024-01-16 | REEP3 and REEP4 determine the tubular morphology of the endoplasmic reticulum during mitosis [multiple data sets in DM4 and TIFF formats] | Belevich I, Jokitalo E [Pubmed: 30995177] [DOI: 10.1091/mbc.e18-11-0698] |
8.7 GB | — | |
2024-01-15 | CryoEM movies of nitrogenase (MoFeP + FeP) from Azotobacter vinelandii under catalytic turnover conditions with inhibitor BeFx [multiple data sets in MRC format] | Rutledge HL, Cook BD, Nguyen HPM, Tezcan FA, Herzik Jr MA [Pubmed: 35901182] [DOI: 10.1126/science.abq7641] |
1.7 TB | 2.4 Å | |
2024-01-15 | Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart [7310 multi-frame micrographs composed of 25 frames each in TIFF format] | Yin Z, Agip ANA, Bridges HR, Hirst J [Pubmed: 38177503] [DOI: 10.1038/s44318-023-00001-4] |
3.2 TB | 3.2 - 4.3 Å | |
2024-01-15 | Full-length ClpX AAA protein in a complex with ClpP peptidase [multiple data sets in TIFF and MRC formats] | Ghanbarpour A, Cohen SE, Fei X, Davis JH, Sauer RT [Pubmed: 37949857] [DOI: 10.1038/s41467-023-43145-x] |
1.9 TB | 3.12 Å | |
2024-01-15 | Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — | |
2024-01-15 | Structure of Bre1-nucleosome complex [4561 multi-frame micrographs composed of 40 frames each in TIFF format] | Zhao F, Hicks CW, Wolberger C [Pubmed: 37872231] [DOI: 10.1038/s41594-023-01137-x] |
972.6 GB | 3.47 Å | |
2024-01-11 | Cryo-ET detects bundled triple helices but not ladders in meiotic budding yeast [multiple data sets in MRC format] | Ma OX, Chong WG, Lee JKE, Cai S, Siebert CA, Howe A, Zhang P, Shi J, Surana U, Gan L [Pubmed: 35421110] [DOI: 10.1371/journal.pone.0266035] |
291.6 GB | 33.0 Å | |
2024-01-11 | In situ cryo-ET structure of phycobilisome–photosystem II supercomplex from red alga [60 reconstructed volumes in MRC format] | Meijing Li ML, Jianfei Ma JM [Pubmed: 34515634] [DOI: 10.7554/eLife.69635] |
113.9 GB | — | |
2024-01-05 | CryoEM micrographs of RAD51 filaments on ssDNA bound by the BRCA2 c-terminus [12005 multi-frame micrographs composed of 38 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37216117] [DOI: 10.1016/j.isci.2023.106689] |
1.8 TB | 2.9 Å | |
2024-01-05 | The Noc1-Noc2 RNP - a co-transcriptional large ribosomal assembly intermediate [multiple data sets in TIFF format] | Sanghai ZA, Piwowarczyk R, Vanden Broeck A, Klinge S [Pubmed: 37037974] [DOI: 10.1038/s41594-023-00947-3] |
5.7 TB | 4.0 Å | |
2024-01-05 | ATTRV20I amyloid fibrils from hereditary ATTR amloidosis [3954 multi-frame micrographs composed of 40 frames each in TIFF format] | Steinebrei M, Schmidt M, Fändrich M [Pubmed: 37993462] [DOI: 10.1038/s41467-023-43301-3] |
1.2 TB | 3.39 Å | |
2023-12-18 | cA3-bound TIR-SAVED [3907 multi-frame micrographs composed of 50 frames each in MRC format] | Hogrel G, Guild A, Graham S, Rickman H, Grüschow S, Bertrand Q, Spagnolo L [Pubmed: 35948638] [DOI: 10.1038/s41586-022-05070-9] |
47.7 TB | 3.8 Å | |
2023-12-18 | ATTRV122I amyloid fibrils from hereditary ATTR amloidosis [2068 multi-frame micrographs composed of 40 frames each in TIFF format] | Steinebrei M, Schmidt M, Fändrich M [Pubmed: 37993462] [DOI: 10.1038/s41467-023-43301-3] |
644.5 GB | 2.99 Å | |
2023-12-12 | CryoEM micrographs of RAD51 filaments on dsDNA bound by the BRCA2 c-terminus [10167 multi-frame micrographs composed of 93 frames each in TIFF format] | Appleby R, Joudeh L, Cobbett K, Pellegrini L [Pubmed: 37919288] [DOI: 10.1038/s41467-023-42830-1] |
1.5 TB | 2.83 Å | |
2023-12-12 | Optimizing Cryo-FIB Lamellas for sub-5Å in situ Structural Biology [multiple data sets in MRC format] | Khavnekar S, Vrbovská V, Zaoralová M, Kelley R, Beck F, Kotecha A, Plitzko JM, Erdmann PS [DOI: 10.1101/2022.06.16.496417] |
1.5 TB | 4.6 Å | |
2023-12-11 | SpCas9 bound to 12 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.1 TB | 3.64 Å | |
2023-12-11 | SpCas9 bound to 14 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
2.1 TB | 3.49 Å | |
2023-12-11 | SpCas9 bound to 16 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.3 TB | 3.12 Å | |
2023-12-11 | SpCas9 bound to 18 nucleotide complementary DNA substrate in the catalytic state [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.8 TB | 2.99 Å | |
2023-12-11 | SpCas9 bound to 10 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
157.5 GB | 3.81 Å | |
2023-12-11 | SpCas9 bound to 8 nucleotide complementary DNA substrate [multiple data sets in TIFF and DM4 formats] | Pacesa M, Loeff L, Querques I, Muckenfuss LM, Sawicka M, Jinek M [Pubmed: 36002571] [DOI: 10.1038/s41586-022-05114-0] |
1.4 TB | 4.14 Å |